barSeed - Barley Seed Development Database

Probe CUST_12925_PI390587928

Source Contig U35_23270

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12925_PI390587928	Hv_44K_v2	CAAATCCTTTGTGCACATAGATAGTCAGTTTGCGGATAAATGCTCTCACCAGAGAGCTCT	657	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.792	0.747	3.093	2.866	2.036	0.826
Raw	5.582	7.715	33.312	50.961	10.779	3.823

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13768.1	1780	7e-23	963 - 1019	100	57 / 57	minus	ABC15576
JLOC1	JLOC1_9351.1	1843	4e-23	784 - 840	100	57 / 57	plus
Harvest21	ABC25656	763	3e-25	585 - 644	100	60 / 60	plus
Harvest35	U35_23270	836	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (836 bp)

>U35_23270 836 Hv_44K_v2
TGTTGGCCTATGGACCTCAACCTTCTTCTTCTTCCTTTCCCTCGCCGGATCGATTTCTTT
GCCCACAGATATTCCCAAAGCATCTCCTTTCTTTCCCTGTTGCCCTCCTCCTCGGATTCC
TCTTCCCCCTCCCTCCTACTCCGCACCCACCCGCCCGTATTATTCTTCTCCCCTCCCCCT
CTCCGCTTTTCCTCCTCGTGCCCGATCTTCCCACCAGCACTCCACCACAGCGCCAGTTGC
GCCAAGAAACGCCGGAGTGCAGGCCGGCATGCGCGCGGACGACGCCGGGAGGCCCGATTC
TAGCCACGCCGGAGCGCAGAAGCCCGCCGAGCTCCCCTCGCCTCATATGGAGAGTGTTTG
TGAGAACACCACAACTGCCGATTTCAAGCAGAGTAACTTCAGCAATTTCCTTCCAAGTGT
TAGATCAGGCGGTTGGTCAGATATTGGAAGCCGCCAGTACATGGAAGATACCCATGTTTG
TATTGCCGACCTAGCTAAAAACTTTGGTTATCCAACAGTGGATAAAGAAGTTGTTTCCTT
TTATGGGGTCTTTGATGGGCATGGTGGAAAAGATGCTGCCCATTTTGTTCGCGATAATCT
GCCGAGGGTCATTGTGGAAGATGCCGATTTTCCTCTGGAGCTTGAGAAAGTTGTGAGCAA
ATCCTTTGTGCACATAGATAGTCAGTTTGCGGATAAATGCTCTCACCAGAGAGCTCTGTC
GTCCGGCACAACGGCACTTACAGCAATGATTTTTGGAAGGTCCCTTCTGGTCGCGAATGC
TGGTGACTGCAGAGCAGTACTTTCCCGGTGTGGCATTGCGATGGAGATGTCGATGG

Homology of Contig U35_23270 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g08140.1	361	3e-92	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi1g47710.1	354	1e-117
Arabidopsis v10	None