barSeed - Barley Seed Development Database

Probe CUST_12923_PI390587928

Source Contig U35_23271

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12923_PI390587928	Hv_44K_v2	CGTACCTACGGTTCGTGGAGATATATACTATATGTCTATATGATTGCAAAAAGTATGATG	565	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71795.1	391	7e-23	293 - 352	98	59 / 60	plus	ABC18182
JLOC1	JLOC1_47740.1	417	4e-23	301 - 360	98	59 / 60	plus
Harvest21	ABC18182	687	3e-25	63 - 122	100	60 / 60	minus	ABC18182
Harvest35	U35_23271	687	3e-25	566 - 625	100	60 / 60	plus

Contig Sequence (687 bp)

>U35_23271 687 Hv_44K_v2
CCAACACTAGCAAAGATCGATCGATCGAGCAGCTAGCAGCTCACCTAGTAAGTAGACTAA
GAGGACGAAGAAAGATGGCTGCAGGGGGCGTGTGGGTGTTCAAGAACGGGGTGATGGAGC
TGGAGCAAGAGGCGACGAGTCGGAAGGCGCTGGTGTACGTGCCGGCGAACGAGAGGATGC
AGTCGCTGGAGGCGCTGGAGCGGCGGCTGGGGTCGCTGGGGTGGGAGCGCTACTACGAGG
ACCGCGCCATCGTGCAGCTCCACAAGCGCGGCGGCGTCGACCTCATCTCCCTTCCCCGGG
ACTTCTCCAGGCTCCGCTCCACCCACATGTACGATGTCGTCGTCAAGAACCGCGACCACT
TCAAGGTTGTCGACCTCTAGACATGCATATGCGCGCCCAAGCTGCCCCAAATCAACTAGG
TATACATCCATACATGCATAGAACATGCATACATGCTACAAGTCCGGTTCAAATAAATGT
GTTTTTTTTTCTTGAACGATTTGAAGATTGCTAACCACGCCTGTCGCGTGGTATATAAAC
GCAGTGTGTGATGTAACGGTGTACACGTACCTACGGTTCGTGGAGATATATACTATATGT
CTATATGATTGCAAAAAGTATGATGTATCTAGTTTCCTTTTCTGTGGAATAAAATGAATG
GAACAATAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23271 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g18240.1	109	1e-52
Arabidopsis v10	None