barSeed - Barley Seed Development Database

Probe CUST_12921_PI390587928

Source Contig U35_23273

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12921_PI390587928	Hv_44K_v2	TTTGATGCAGCTAGGTCTTGTTGACGTTGTCTGATTGTAATATTGCCATGATTTGGACTA	692	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.071	1.219	1.140	1.012	0.387	0.336
Raw	3701.633	6718.300	5461.473	7756.997	1017.100	966.464

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357176	1012	2e-24	755 - 814	100	60 / 60	plus	ABC21223
MLOC	MLOC_36903.1	915	2e-24	349 - 408	100	60 / 60	minus	ABC21223
MLOC	MLOC_36904.1	1300	2e-24	39 - 98	100	60 / 60	minus	ABC21223
JLOC1	JLOC1_23822.1	1417	8e-25	1113 - 1172	100	60 / 60	plus
JLOC1	JLOC1_23823.1	1347	8e-25	246 - 305	100	60 / 60	minus
Harvest21	ABC21223	793	3e-25	693 - 752	100	60 / 60	plus	ABC21223
Harvest35	U35_23273	793	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (793 bp)

>U35_23273 793 Hv_44K_v2
CGACCCACGCCGTCCGTTCCACCACAAGCCAAGCCAAGCCACACTGCCTGCCTTCCTGCT
CCAGCCTACCCTCCCACCGCAAGCCAGAGTGTGGCCCGCCACCGCCAGAGATTCGCAGCC
ATGTCCGACGAGCTCAGGCGCGGGATCGCGGGCTCCGCCGCCGTCGCCGCCTCCCACCCG
GCGCCCTACGCCGCGACGCGGGCCCCGGCCGACGCCGACCGCAGGCTCGCCGCCTCCGCC
ACCGCCGCCCTGGGATCCCCGCCGCCGGCCGCCGCGTCGCCCACGGCGCACAAGATCACG
CTCAAGAGCGCCGACATGAAGGAGGAGATGCAGAAGGAGGCGTTCGACATCTCCCGCGTC
GCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAGTACATCAAGAAGGAGTTCGAC
AAGAATCACGGCCCTACCTGGCACTGCATCGTTGGCCGCAACTTCGGTTCCTACGTGACG
CACGAGACGAACTACTTTGTGTATTTCTACATTGATTCTAAAGCTGTCTTACTATTCAAG
TCTGGGTGATGGGTGCGTCTGATCCCTCTCTCCCCTGGCGTCAGTCTCCTGTGTGCCCCT
CTTTCATCTGTGTCGGCCACGAAACTGGAAATCAGAAATTTGGAAAGAGCCTCCATGTTG
GTGTGAGATTTTAGATCGTGTCTCTCTTTTGCTTTGATGCAGCTAGGTCTTGTTGACGTT
GTCTGATTGTAATATTGCCATGATTTGGACTANAAGTCATCATCAACGATGCACCGAAAA
AAAAAAAAAAAAA

Homology of Contig U35_23273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15260.1	131	2e-54	protein\|dynein light chain type 1 domain containing protein, expressed
Brachypodium v1_2	Bradi2g09140.2	151	2e-54
Arabidopsis v10	None