barSeed - Barley Seed Development Database

Probe CUST_12919_PI390587928

Source Contig U35_23276

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12919_PI390587928	Hv_44K_v2	TTACTCACTCTGTTGTCGCTCTCAAATTGATCAACTACTCCCTCTGTTTCTAAATATAAA	525	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.672	3.377	1.481	0.571	0.645	0.687
Raw	42.093	64.924	22.922	12.747	4.163	5.218

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_23276	632	3e-25	526 - 585	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_23276 632 Hv_44K_v2
CGAGCGGGCACGAGGTGCGNCCGGGGGAGAAGGTGATGGTGTCGCTGTACGCGATGGGGA
GGATGGAGGCGGTGTGGGGCAAGGACTGCCGGGAGTTCCGGCCGGAGCGGTGGATCGGGG
AGGACGGCAAGCCGCGGTACGTGCCGTCGTACAAGTTCCTGTCCTTCAACTCCGGCCCGC
GGACATGCCTCGGCAAGGACATGGCGTTCGTGCAGCTCAAGGCGGTGGCGGCGGCCGTGC
TGAGCAACTTCCAGGTGGAGGCCGTGCCGGGGCACGTCGTGGAGCCCAAGATCTCCATCA
TCCTCCACATGAAGAACGGCTTCAAGGCCAGGATCAAGAGGAGGCATGCAGGTGCCTGAT
TAAAATGTAAAGTAAAATCGATCCTCTGCCTGATGATCGTGAAAGGGAAGATGCAAAATA
TGTTTTAGCTGCGCTTGATCGATCGCTGAATGTTGAATGAATGGCCAGTAGCAAGTCGTA
CTCAAGTCCATCAACTAGCACGTACATTGACTACGGAGTGTGTCCTTACTCACTCTGTTG
TCGCTCTCAAATTGATCAACTACTCCCTCTGTTTCTAAATATAAATATAAGACATATCTC
TATTTATAAAGGGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_23276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g04650.1	509	4e-62	protein\|cytochrome P450 protein, putative, expressed
Brachypodium v1_2	Bradi1g75740.1	519	4e-60
Arabidopsis v10	None