barSeed - Barley Seed Development Database

Probe CUST_12906_PI390587928

Source Contig U35_47232

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12906_PI390587928	Hv_44K_v2	TTCTCAGTTGCTCCACCATCGACTTGCACCAATGTTGCAAGGTGGTACAATCACATTGAT	467	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.501	0.496	1.224	1.965	0.971	1.188
Raw	2260.767	3490.449	7613.530	19835.687	3297.897	4445.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7337.1	1270	2e-24	887 - 946	100	60 / 60	minus	ABC01492
MLOC	MLOC_7337.2	1055	2e-24	645 - 704	100	60 / 60	minus	ABC01492
JLOC1	JLOC1_4838.2	1413	8e-25	316 - 375	100	60 / 60	plus
JLOC1	JLOC1_4838.1	1013	8e-25	262 - 321	100	60 / 60	plus
Harvest21	ABC48070	567	3e-25	468 - 527	100	60 / 60	plus
Harvest21	ABC01492	1409	3e-25	216 - 275	100	60 / 60	plus	ABC01492
Harvest35	U35_47232	567	3e-25	468 - 527	100	60 / 60	plus
Harvest35	U35_14285	1408	3e-25	219 - 278	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_47232 567 Hv_44K_v2
TTTTTTTTTTTTTTTTTCTGAGTCGACCAACAGCAGTCTTAATATCAAAGAGCTCATTCT
AACACAGACGAACCCATAAACCATGGTCTTAAGCTACAAATCTCGATAAACAAAATCATC
GGGGGGTTCACAGAATTCAAACATCAACAGATTGGACAGCACCCAACGCTTGCATTGGAT
CTGAAGACCAGTTGGGTGCTCCCATTTGCTGAAGTGTAGCTTCTTCACTCCATGGAAGGT
CCAGAACCGAACGTGCCACCGCCGCCTCCACGGCCAAAGGGCCTGGCACCACCAGCACCC
CTGAAAGCTGGCTGGTAGTCAGCAGGAGCTCCACCCTTCTCACCAGCAAAATCACCAGGA
GCACCACCGCTGAGGCAGGCCTTAAAAAGCTTGATGGCTACCTTCTGTCCCGCAGCTACA
TCTCTGGATACCAAGCTTCCAAGGATGACTTGGCTGTGTATTCTGAATTCTCAGTTGCTC
CACCATCGACTTGCACCAATGTTGCAAGGTGGTACAATCACATTGATGCGCTCCTGAAGC
TGAGTGGAGTTACTGCCCCTGGTCAAG

Homology of Contig U35_47232 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None