barSeed - Barley Seed Development Database

Probe CUST_12905_PI390587928

Source Contig U35_47233

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12905_PI390587928	Hv_44K_v2	AACGTGGTCTATAGCACGAAAAACCATTCTTTACAAGATAGGGCCGTTCACATGAAAAAA	11	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.504	1.606	1.112	0.574	0.206	0.154
Raw	20174.867	12933.793	8896.653	6705.740	949.316	734.246

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_847.1	2700	7e-23	2107 - 2167	98	60 / 61	minus	None
JLOC1	JLOC1_522.1	3473	4e-23	2886 - 2946	98	60 / 61	minus
Harvest35	U35_47233	673	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (673 bp)

>U35_47233 673 Hv_44K_v2
TTTTTTTTTTTTTTTTTCATGTGAACGGCCCTATCTTGTAAAGAATGGTTTTTCGTGCTA
TAGACCACGTTGAGAAAGACCAACCAACAACACAAATAAAGACCGTTCCATTTGGGTACC
TCGAAAGGGAGGTGCTCTTTATGATGCTACGGACGGCTGTCCGAAGTGCATGCAATGACG
GGCTCGGATAGGATAGGATTGTGCGCGCCGGGCCCTTCGGGTGTCCATATTTTGGCCGAC
CTTAGCGTATATACTATGTTATGCGGCCGTAATATTTTGATACCTTCCACCGCTGTTACG
CCAGAAATCCAAGGTTCCACACGAGCTCCTGTTCTGCGGCGTGGTGGCAGGACCGCTAGG
GGATTGGCTCCGGGTGTAGGTAGGGTCAAATCCGCAGGGGTCATGCAAATACATAGGCCC
CTTCCCTTCTGCCGAGTTGTTTAGAAGGCGCTTTCCGTTCTACGGTCCCTCGGAGCGAAG
GGTTAGGCAGGTAGTACGGGCCCTCTGACTTCCAGCTATGTGCTGTGTGCGACTCCCGCG
AAGCGAATGAAGGGAAGCTCTTCGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCA
TTCCTACGTGCTCCGACTGATCCCCACTGGAGATTATATGAGGGGTCTTGGAAACTGTCG
TGACGCTTTGGTG

Homology of Contig U35_47233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None