barSeed - Barley Seed Development Database

Probe CUST_12901_PI390587928

Source Contig U35_47238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12901_PI390587928	Hv_44K_v2	TCTGGTTTCGTGAACACTATGTAAAGACTGTAATAGGCTAATTTTGGCTACCATTTGAAG	539	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.425	1.219	1.137	0.812	0.296	0.309
Raw	50.494	64.319	53.866	62.703	6.900	8.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79076.1	848	2e-24	725 - 784	100	60 / 60	plus	ABC48081
JLOC1	JLOC1_52692.1	2764	8e-25	2663 - 2722	100	60 / 60	plus
Harvest21	ABC48081	657	3e-25	540 - 599	100	60 / 60	plus	ABC48081
Harvest35	U35_47238	657	3e-25	540 - 599	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_47238 657 Hv_44K_v2
GGTTGGATGTTGCTTGCTGGCTTGTTGCGTGCTCTTTTTTGGTTGTGCTGATGCTTCATA
TTCTGCTTCTCTAGTTGTTTGAATGCTTTTGCTGCTAGCTACTTGCTTGAATAGGTGTGC
TCTTGTGCTGGTGGTGGTACTTCTTGTGCTGCTACTGCTCATTCTTGTGTTCCTGTTGCT
GATTCAATGCTTATGCTTGTGATGTTGTTGATTAAATGCTTATGTTGTTGCTGCTTATGC
TACTGATTCGATGCTTAGGTAGTACTAGTAACCAAAACAGACTTCTTTACCATTGCATGT
GTTTGAATTGTCTTCCAATTATGTCTCGTCGTCTAATCTTCTTTAGTATTTGTGTTTGAT
GTGTGATTGTGTTTGATGTGTGACGGATCGAGCTTGCAATGACATGACATTTTGTAAGAC
GATGTTCATAAGTTGGAAGAGGAAGACGATGAAGCCTGGTAGTTATCTACCAATCTGCCT
TGTGTTCTCGTTATACTCCGTAGCTAGTTATAGTGTACTATATTGTACCCAGTACCATAT
CTGGTTTCGTGAACACTATGTAAAGACTGTAATAGGCTAATTTTGGCTACCATTTGAAGA
ATTTAGTTTATTTCATTTGATCTANNAAAAAAAAAAAANAANNNANAAAAAAAAAAC

Homology of Contig U35_47238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None