barSeed - Barley Seed Development Database

Probe CUST_12900_PI390587928

Source Contig U35_47239

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12900_PI390587928	Hv_44K_v2	TGGTACTCAGCGTTCTGCAGCCTGGTCAAGTCCCAGAGGGACTATGTGTACTCACTGACC	551	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361816	1924	2e-24	1122 - 1181	100	60 / 60	plus	None
MLOC	AK356988	2316	2e-24	1453 - 1512	100	60 / 60	plus	None
MLOC	MLOC_5125.1	1610	2e-24	722 - 781	100	60 / 60	plus	None
JLOC1	JLOC1_3274.2	1637	8e-25	658 - 717	100	60 / 60	plus
JLOC1	JLOC1_3274.1	1729	8e-25	750 - 809	100	60 / 60	plus
Harvest21	ABC48083	644	3e-25	552 - 611	100	60 / 60	plus
Harvest35	U35_47239	644	3e-25	552 - 611	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_47239 644 Hv_44K_v2
GGTGGTCGTGGGGCGGCGGAGGAGGAGGCTACGGGAAAGGCAGCAGCAATGGCTTCTCCA
GGTTCGAGAGAGGGGACGAAGGGGTGATGGGCAATGGCGGAGGCAGTGGGATCCTCAGCC
ACTCCTCCACCGTCGAAAGGCTCTACGCCTGGGAGAAGAAGCTGTTTCTCGAGGTCAAGA
ACTACGAGGGGCTTAAGCAGGAGCATGACAAGAAGGTGGGGCTGCTGAGGAAGCAGGAGG
TGAGGGGCGTGGACTACCTCAAGATGGAGAAGAACCGGATGGAGATGGAGAGCCTAGAGT
CCAAGATGCTGGTGGCCACCCAGTCCATCGACACCACCACCTCCGAGATCATCAGGCTGA
GAGAATCAGAACTGTTTCCTCAGCTACTTGAGCTGGTTGCTGGCTTGATGAGCATGTGGA
GGGGCATGTATGAGTGCCATCAGGTGCAGACCCACATGGTGCAGCAGCTTGAATACCTCA
CCATGAGTACCAACCCAACCTCCAATGACCACCGGCAAGCGGCTCTCCAGCTCGAGATCG
AGGTGGACAGGTGGTACTCAGCGTTCTGCAGCCTGGTCAAGTCCCAGAGGGACTATGTGT
ACTCACTGACCGGCTGGCTTCGCCTCTCCCTGTTCCAATGCCAT

Homology of Contig U35_47239 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36760.1	654	4e-118	protein\|DUF630/DUF632 domains containing protein, putative, expressed
Brachypodium v1_2	Bradi4g36477.1	647	8e-124
Arabidopsis v10	AT3G51290.1	634	1e-63	Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) \| chr3:19039980-19042437 FORWARD LENGTH=634