barSeed - Barley Seed Development Database

Probe CUST_12899_PI390587928

Source Contig U35_23280

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12899_PI390587928	Hv_44K_v2	CTGGTATAGATATTAATATGCCTTCATCTAGTGGGCACAGGAACATTGAAATGAATGATG	1004	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.491	0.691	1.714	1.804	1.132	1.086
Raw	5.231	11.051	26.073	38.235	9.769	9.817

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.3	4453	2e-24	1923 - 1982	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.6	1764	2e-24	1041 - 1100	100	60 / 60	plus	None
MLOC	MLOC_55658.4	3426	2e-24	1919 - 1978	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.1	4193	2e-24	2717 - 2776	100	60 / 60	plus	ABC42998
MLOC	MLOC_55658.2	3804	2e-24	2689 - 2748	100	60 / 60	plus	ABC42998
JLOC1	JLOC1_35933.3	3129	8e-25	1730 - 1789	100	60 / 60	plus
JLOC1	JLOC1_35933.2	3329	8e-25	1930 - 1989	100	60 / 60	plus
JLOC1	JLOC1_35933.1	3365	8e-25	1864 - 1923	100	60 / 60	plus
Harvest21	ABC16928	1064	3e-25	1005 - 1064	100	60 / 60	plus
Harvest35	U35_23280	1064	3e-25	1005 - 1064	100	60 / 60	plus

Contig Sequence (1064 bp)

>U35_23280 1064 Hv_44K_v2
GTGGCTTCCAAATGTTCAGGACTGTGAAGAAAACTCAACCCACTCAGCTAAAAATGCACT
TTCAAATGAACCAGATGAAATGTTTTATTCCCCCCTTGTTGAACACCAGAAAAGTTCATT
CTCTGCATCAGCCAAGAAAGATAAAGGAAAAGGCAAAAGGCCCCTCAAAGATTCGGGATG
CAGCATGAGCTCGCCTTTATTAGATTGCAGCCTGTGTGGGGCTACAGTTAGGATCTGGGA
CTTCAGATCTGTGTCACGTCCTACTCGTTTTAGTCCAAATAACACTGATGCACCAGAAAC
AGGCAAAAAGCTAACACTGACGCGTGGAATTAGTGCAGCGAGTGGGATCAATGGATGGGT
TAATGATGGGGTGGTAAGAGATCAAGCTGAAGGACGTGATGAAGCAGCAACTTATGAGGG
GAAATTAGTATCAAATGCTGGAGTAGACCTTAATCTATCGATGGCTGGAGGACTACCACC
ACTTCATTCTTCAGTGGCTGTTGCATCTGAGTGTTGTAATGGAGGAATGGGAAGAGATCT
GATGATTGCACAGCCCGCTGGAAGTGAAGTTGGTGATCGTGCAACATCATATGAGTCTCG
GGGTCCAAGCTCGCGGAAGCGTAACCTTGAGGAAGGCGGGAGCACAGCTGACAAGCCACA
GGACGGGATTCGACATGCTGACAGCATAGAAGGAACTGTCATTGATCGTGATGGTGAAGA
AGTTGACGATGACGTGCAAGATTCAGATACCAAGAATAAAAAATCCCGCGGGTTCAACTT
TTTTGATGCCAATCTTCCATCTTCTTCTGGAGCTGGTCCTAGTAGAAACTTGTGCTTTGA
CTTGGATGTGGATATTAGTATGTTCGGTCACTCTAGAGCTGTCGGTCTAGCTCCTGTTGA
GCATCCATCTGCTAGAGATTCTATGAGGGCGTCTTCTGTTATCGCAATGGATGTTCGCAG
CGCTGATGAAGATTCAATGGAGAGTGTTGAGTACCATCCAGATGCTGGTATAGATATTAA
TATGCCTTCATCTAGTGGGCACAGGAACATTGAAATGAATGATG

Homology of Contig U35_23280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g57160.1	944	1e-168	protein\|zinc ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g06480.1	958	0.0
Arabidopsis v10	AT1G17210.1	958	6e-74	\| Symbols: ATILP1, ILP1 \| IAP-like protein 1 \| chr1:5880502-5884657 REVERSE LENGTH=958