barSeed - Barley Seed Development Database

Probe CUST_12898_PI390587928

Source Contig U35_23281

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12898_PI390587928	Hv_44K_v2	TCCGCTTGTCAATGACAGACAGTTCTGTGCTTGGAAAGTACAAAGCGTTGATCAGTCACT	508	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.084	0.251	1.018	2.334	1.307	1.209
Raw	54.770	251.726	896.435	3303.529	629.043	641.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57994.2	949	2e-24	526 - 585	100	60 / 60	plus	None
MLOC	MLOC_57994.3	772	2e-24	390 - 449	100	60 / 60	plus	None
MLOC	MLOC_57995.1	4394	2e-24	527 - 586	100	60 / 60	plus	ABC24757
JLOC1	JLOC1_37648.1	993	8e-25	596 - 655	100	60 / 60	plus
Harvest21	ABC17854	584	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_23281	584	3e-25	509 - 568	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_23281 584 Hv_44K_v2
CCCCCCTCCCCTCTCCTCTCCGGCGGCCGTCGCTTTCCCCACCCCACGGGCTCCTCCTCC
CCGCTCCGCTCGCCAGCCAGACGCTCCCGGTTCTCCACGTCTCGGCCCCCCTCCGACGCC
TGACCCGCTCCCTCGCGCCACCGTCTGCGCGCTCCAGGTCCTTGTTGAGTGAAGCATCTT
CCTTCCTTTTTCGCGACATGGGTATGGAGAATCTGATGAGCGTCGTCAATCCTTCAGCAG
GTTACAACTTCCAAAGAGGTTTCGAACGCCGTGGTGATGGAACCATGGAGGAAATGAAAG
AGCTAAAGAAACAGAGGACAGAAAGAATGATGGAAGACTACCAAAACACAGAAAGCAGAG
ATGGAGCCATCAGATGTCCAATTCCATGCAAAAGCAGCAGGCCATACAGAGAGTATGATT
TTAAAGCTGCTCAAGATCTCTCCGATTTTATTGTGAGCAAGGCTTCTCCTCCATACTTCA
TGGGATCTCCGCCAGTTCGTGCAAGCAATCCGCTTGTCAATGACAGACAGTTCTGTGCTT
GGAAAGTACAAAGCGTTGATCAGTCACTCGGCGTTCCTATACCA

Homology of Contig U35_23281 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g31660.1	142	2e-59
Arabidopsis v10	None