barSeed - Barley Seed Development Database

Probe CUST_12892_PI390587928

Source Contig U35_23287

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12892_PI390587928	Hv_44K_v2	GGATGCAGGATTAGAGTGTCACATCATCTTCAATATTTGATTATGTACAAAGAAAGCATC	755	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.317	0.690	1.017	2.466	0.999	1.563
Raw	49.912	178.534	224.857	872.839	119.300	205.255

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354974	1466	2e-24	1331 - 1390	100	60 / 60	plus	ABC21232
MLOC	MLOC_26759.1	668	2e-24	16 - 75	100	60 / 60	minus	ABC21232
JLOC1	JLOC1_18150.1	799	8e-25	573 - 632	100	60 / 60	plus
Harvest21	ABC21232	907	3e-25	756 - 815	100	60 / 60	plus	ABC21232
Harvest35	U35_23287	907	3e-25	756 - 815	100	60 / 60	plus

Contig Sequence (907 bp)

>U35_23287 907 Hv_44K_v2
GGCGCTGCTGGACTCGGTGGAGGGGCTGAAGGGCAAGCGGGTGGCCGTGGCGGGCACGAG
CTACGGCGGGTTCGTGGCGTACTGGCTGGCGCGCGCGGCGGGGCCGCGGAGGGTCGGCCC
CGTGGTGATCGCGAGCTCCGACCTGCTCAAGACGGCGGCCGACGACCGCGCGTTCCTGAA
GAGGGCCGGCGAGGGGTGGCGCGGCGCGCACGAGCTGCTCCTGCCGGCCGAGCCCGCCGC
CATGAGGAGGCTGATGGAGATGGCCGTGTACCGCCCCCCGCCGGCCATGATGACGCCGGA
CTTCGTCCTCCGGGACTTCATCCAGAAACTGTTCATGGACAACAGGGAGCAGCTCGCCCA
TCTTTTCAAGGGGATCACCGTCGGCACCGACAAGTTCCAAGTCACACCATTGCCTCAGGA
AGTGCTGATTGTCTGGGGAGAGCATGACCAGTTGTTCCCCGTGGAAAAGGCCTACGCAAT
TCAGAGCTCATTGGACGGGAAAGCTAGAGTGGAGATCATAAAGAAGACGGGCCATGCTCC
ACAGCTCGAGGACCCGGCCCGGTTCAACAACATCGTGCTGGACTTCTTGATGGCTGCAGA
TCCTGCCTGCGCCCATGGCAGCTCGCTGTGAGATGCGTAGCCACCATCTACTCCATTGAT
TGCAATAAGATTGCTTAGCGATTTGGGCCCATGCATTCAGTTATTATGTCCTAATGTGTA
CATCAATCTGGGTCTATTTGATTTGCATGATTCTCGGATGCAGGATTAGAGTGTCACATC
ATCTTCAATATTTGATTATGTACAAAGAAAGCATCAGATTTTTTCCCCGAAGAATTACAA
TTTACAACAGATGGAAAAAGTTTCTATGAAAACTAGTGTATCTTGATATCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_23287 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08100.1	329	8e-103	protein\|hydrolase, alpha/beta fold family protein, putative, expressed
Brachypodium v1_2	Bradi1g72762.1	339	3e-112
Arabidopsis v10	None