- Probe CUST_12882_PI390587928
- Source Contig U35_47243
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12882_PI390587928 | Hv_44K_v2 | AGACGCTGTCTCCGGAGAAATTTACTGCCTAGGATGTTAACAATTTGTGATAACTTTTTT | 63 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.524 | 1.477 | 1.044 | 0.924 | 0.326 | 0.342 |
| Raw | 1036.167 | 1611.527 | 984.547 | 1421.119 | 171.422 | 195.017 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC48094 | 467 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC14281 | 1230 | 8e-21 | 71 - 125 | 98 | 54 / 55 | minus | ABC14281 |
| Harvest35 | U35_47243 | 467 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_21193 | 1230 | 8e-21 | 1106 - 1160 | 98 | 54 / 55 | plus |
Contig Sequence (467 bp)
>U35_47243 467 Hv_44K_v2 TTAAAAACAAAAAAGGGCATTTATTTGTTACATATCCAGGAAAGATAGTTTTTGATTGTC CAAAAAAAAGTTATCACAAATTGTTAACATCCTAGGCAGTAAATTTCTCCGGAGACAGCG TCTTGATTCTCCGACTAAAATTCTGCATTATGTCGACGAGCATCAGCTTTTTTTGCAATC TAAACTGGACGGTTTTTTCAGTAGTAAGAGGGGGTTCTCCCTTTAGGAGGGGCTGGGCAT CCATTATTTTGGTGGGGAAGTGTTGGAGGGCAATGGCCCAAAGCGCGAAAACAGTTCGGA ACGCAAAGGCTTCAACAGTAGGGCCTAAAGGAGCTTTCGCGCTAAGTGACATCAAAGTTT TCAAATCGTGCTTACCCACAGCCTTTGGGTCAGCTGCAAAAAAAACTCCCAGCGCAGCTA ATAAGCGCCCATTTACTATGTCCGGACCTCCTAAGCTGACCTTTAAA
Homology of Contig U35_47243 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi3g56840.1 | 486 | 3e-53 | |
| Arabidopsis v10 | None |