- Probe CUST_12880_PI390587928
- Source Contig U35_47245
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12880_PI390587928 | Hv_44K_v2 | TTCTAGATTGCTTAGGGCAAAGGCTGCTGGAGAGGAATCTGTGTTGAAAGAATTTCCTGA | 568 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.590 | 0.780 | 1.982 | 2.718 | 1.052 | 0.925 |
| Raw | 149.271 | 304.410 | 684.046 | 1504.386 | 203.827 | 191.857 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355389 | 1572 | 2e-24 | 664 - 723 | 100 | 60 / 60 | plus | ABC04501 |
| MLOC | MLOC_22334.3 | 928 | 2e-24 | 554 - 613 | 100 | 60 / 60 | plus | ABC04501 |
| MLOC | MLOC_22334.2 | 1467 | 2e-24 | 573 - 632 | 100 | 60 / 60 | plus | ABC04501 |
| MLOC | MLOC_22334.4 | 1417 | 2e-24 | 554 - 613 | 100 | 60 / 60 | plus | ABC04501 |
| MLOC | MLOC_22334.1 | 1262 | 2e-24 | 585 - 644 | 100 | 60 / 60 | plus | ABC04501 |
| JLOC1 | JLOC1_15478.1 | 1558 | 8e-25 | 522 - 581 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48097 | 631 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04501 | 1603 | 3e-25 | 694 - 753 | 100 | 60 / 60 | plus | ABC04501 |
| Harvest35 | U35_47245 | 631 | 3e-25 | 569 - 628 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_15956 | 1658 | 3e-25 | 694 - 753 | 100 | 60 / 60 | plus |
Contig Sequence (631 bp)
>U35_47245 631 Hv_44K_v2 CTCCCCCTCCGACTCCGACAACCGCCACCGACGACGGCGAAGATGCAGGCGGCGGCGGCG GTGCGGCGCCACCTCCTCGACCGCACCACCTCTCCCCGGCCTCCTCGGCCGCCATCGCCG CCTTCAGATCCGCCGTCAAGGGGGCGGGCCATCTCGTCCGCAAGGGCACCGGAGGGAGGT CCTCCGTGAGTGGAATCGTCGCTACGGTGTTTGGAGCTACTGGATTTCTTGGACGCTATG TCGTTCAACAACTTGCGAAGATGGGATCTCAGGTTCTTGTCCCATTCAGAGGTTGTGAGG ATTCTCACCGCCACCTGAAGCTAATGGGTGACTTGGGTCAGATTGTTCCAATGAACTACA ACCCAAGAGATGTGAATTCGATTAAGACTGCCGTGGCCAAGTCAAACGTGGTCATTAACC TCATTGGACGGGAGTATGAAACAAGAAACTATGGGTTTGAAGAAGTAAACCATCAGATGG CTGAACAACTTGCAATGATATCCAAGGAGCATGGGGGTATCGTGAGATTTATCCAGGTTT CTGCTTTGGGAGCATCAGCCTCTTCACCTTCTAGATTGCTTAGGGCAAAGGCTGCTGGAG AGGAATCTGTGTTGAAAGAATTTCCTGAAGC
Homology of Contig U35_47245 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g57180.1 | 409 | 3e-85 | protein|NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g55340.1 | 413 | 1e-91 | |
| Arabidopsis v10 | AT2G20360.1 | 402 | 2e-72 | NAD(P)-binding Rossmann-fold superfamily protein | chr2:8786070-8789098 FORWARD LENGTH=402 |