barSeed - Barley Seed Development Database

Probe CUST_12879_PI390587928

Source Contig U35_47248

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12879_PI390587928	Hv_44K_v2	ACATGAAATCAAGCAACATCCTGCTCGATGTGAATTTCGAGCCAAGAGTCTCCGACTTTG	558	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.710	1.559	3.657	2.142	0.930	0.784
Raw	4.632	20.110	40.562	37.783	4.960	3.844

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC48106	647	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_47248	647	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (647 bp)

>U35_47248 647 Hv_44K_v2
TTCGGCACGATTGTTTTATTGTGCCTGCCAGCAAGGCCAAGGCTACCGTTTGGGGCGCCT
CAAGTGATGAGCTCCTAGGAAGGAAGTCGCGGGAGCCTCTGAGTATCAATCTCGCAACTT
TTCAGCATTCACTGTTGCGGGTCACAGCTGATGATATACTGAAAGCCACAAAGAATTTCA
GTAAAGAACACATCATAGGCGATGGTGGCTTCGGCACTGTCTATAGGGCGGCACTCCCTG
AAGGTGGGAGAGTCGCAATCAAGAGGCTTCATGGTGGCCATCAGTTTCAAGGTGACCGTG
AATTCCTTGCTGAGATGGAGACCATTGGAAAGGTGAAGCATCCAAACCTTGTTCCCCTAC
TTGGCTACTGTGTTTGTGGCGACGAACGGTTCCTGATCTATGAGTACATGGAGAATGGCA
GCCTTGAGATATGGCTGAGGAACCGAGCAGATGCAGTTGAAGCGCTTGGATGGCCAGACC
GTCTCAAGATCTGCCTCGGTTCTGCCCATGGGCTTGCTTTCCTTCATGAAGGATTTGTGC
CTCATATCATCCACCGGGACATGAAATCAAGCAACATCCTGCTCGATGTGAATTTCGAGC
CAAGAGTCTCCGACTTTGGCCTTGCAAGGATAATCAGCGCGTGTGAG

Homology of Contig U35_47248 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g68870.1	1295	5e-126	protein\|leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed
Brachypodium v1_2	Bradi2g58780.1	1295	4e-130
Arabidopsis v10	AT5G07280.1	1192	5e-78	\| Symbols: EMS1, EXS \| Leucine-rich repeat transmembrane protein kinase \| chr5:2285088-2288666 FORWARD LENGTH=1192