barSeed - Barley Seed Development Database

Probe CUST_12877_PI390587928

Source Contig U35_23291

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12877_PI390587928	Hv_44K_v2	CATAAAGCGTTTCGTCTGAAAAGGATGCGAAGCAAGCAACGATGATTAGTTATTTTCAAA	533	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.652	0.784	2.080	3.429	1.388	1.038
Raw	3.254	8.261	22.223	57.425	7.485	5.720

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_39121.1	1914	6e-21	128 - 187	97	58 / 60	minus
Harvest21	ABC47182	607	3e-25	15 - 74	100	60 / 60	minus	ABC47182
Harvest35	U35_23291	607	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (607 bp)

>U35_23291 607 Hv_44K_v2
CCACTCAAGTTCCTGCCATCTGGGTTCCTTGAGAGGACCAAGGAGGTGGGCCTGGTGGTT
CCATCCTGGGCCCCGCAGGTCAGGGTCCTCGGCCACCGGGCCACGGGAGCCATGTTAACG
CATTGTGGATGGAACTCGGTGTTAGAGAGCGTAATGCACGGCGTTTCGATGATCGTGTGG
CCTCTATACGCCGAGCAGAGACAGAATGCCGTGATGTTACATGAAGAAACCAAGATAGCA
CTAAGACCAAAGGTTCGAGGAGCAGATGGACTGATTCTTGGCGAAGACATCATGAAGGTT
GTGAATGATATGATGACCAGTGAAGAAGGGGATGCGATGCGTATGAAGATGACAGAGCTC
CAGAAGGCGGCGAGGGGTGGACTGACGGCAAATGGCATGTCACACAAGACACTTACCGAG
GTGGTGAGGAAGTGGAAGGGAGGTGCATGACGATGCCATTTATCAAGGCCATCAGAGTCG
TTAAAAGGGTTGATGTACGAGACCAATTGTGTGTTGTATATTCTCACATAACTCATAAAG
CGTTTCGTCTGAAAAGGATGCGAAGCAAGCAACGATGATTAGTTATTTTCAAAAAAAAAA
AAAAAAA

Homology of Contig U35_23291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None