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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12872_PI390587928Hv_44K_v2CGTGGGCTTGTAACACCAGGGGCATTCATGTTTTTGATAATTTTCTATTTCAATAGTGAA663GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4411.6501.0380.8470.3340.340
Raw 3893.7736901.9473883.5704972.203692.701763.316



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36892820912e-242016 - 207510060 / 60plus ABC18412
MLOCMLOC_79155.123432e-2450 - 10910060 / 60minus ABC18412
MLOCMLOC_79155.223402e-2450 - 10910060 / 60minus ABC18412
JLOC1JLOC1_52743.423378e-252176 - 223510060 / 60plus
JLOC1JLOC1_52743.323408e-252179 - 223810060 / 60plus
JLOC1JLOC1_52743.221818e-252020 - 207910060 / 60plus
JLOC1JLOC1_52743.126258e-252464 - 252310060 / 60plus
Harvest21ABC184127293e-257 - 6610060 / 60minusABC18412
Harvest35U35_232967293e-25664 - 72310060 / 60plus



Contig Sequence (729 bp)

>U35_23296 729 Hv_44K_v2
GCGAGTAGCAACTTGGTTCTTACAGCAATATTTTCCGGGTGTTCAATTGCGGTGCTGGTG
GCAGTGAAGTGACCACGCTTGAAGCAACTCGAAACCCCACAAGAAGGCAGATCCAGAATC
CCGCACGGCCGGCGAGATCTCTAAGTAGTCTGACAAGGGTTGTTAGACGAGGTGCAGAGA
ACACCGGAATAGATGCGAATGGGAACTCCTACGACTTGAGCACAAAACTGCTGCATTTGG
CATGGCACCCATCCGAAAATTTAATTGCCTGTGCTGCAGCCAACAGCTTGTACATGTACT
ATGCGTAAAACACGGGAAAGGAGCGAAGGGACAGTATTTTTTGGTAGCTGCTCCCGGCGA
GAAGAGGAGTTATATTATCCTTGGTACGGCAAATCAGGGAGATGGTATATTTTGGGCCAG
TCACATGCTGTTCTTTTGAGTTCCATATAGAGCTGTCCAAGAGTCCAAGAGGAAGTGACT
GGATCATTCCCGGGAAGCAGCTTGATTCTGATAAATTTTTTATTTTATAGGGGAAATGGC
CTGTCTTTCCCCTATAGGTTCATTTAGGTTTAAGATAAGATTCTGGTTCGCCATTTGGAA
GGAACAAAACTTCTGGGCATCTCCAGTAGATGATAAGGGGATGACCTGCCGTTGTGATGG
AATCGTGGGCTTGTAACACCAGGGGCATTCATGTTTTTGATAATTTTCTATTTCAATAGT
GAACTTTCC



Homology of Contig U35_23296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None