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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12871_PI390587928Hv_44K_v2CCTGTTTTTGGCCAATATACATTTTCTGACAAATCATCATACGATGGGACTTGGATAAAA878GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8631.8411.1140.9200.5240.512
Raw 1066.3501675.935869.4351104.373228.382241.683



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3708979837e-23854 - 91010057 / 57plus ABC18506
JLOC1JLOC1_10567.110244e-23900 - 95610057 / 57plus
Harvest21ABC185069513e-25879 - 93810060 / 60plusABC18506
Harvest35U35_232979513e-25879 - 93810060 / 60plus



Contig Sequence (951 bp)

>U35_23297 951 Hv_44K_v2
GCTTTGCTTCCCCGATCCTCCCCTCCCCTCTGGATTTTACTTTACTGGCCCGTTCGCCCC
CCTCCCCACGACTCAAACCGATCCCCTTCCCCTTCCCCGAATCCGCTCGCCGCCGCCGTA
AAACCCTCTCCGCCCTCCGCCAGCCCCGCCGCCGGGGAGAGATGGTGCTGTGGGAGATCA
CGGCCATCACGGCCTACTTCCTCGGCCTCCGCCGCACCTACCGCCTCGCGCTCCGCGGCC
AGCGCCGCCTCATCGGCCCCAACCACCCCAAGCTCCGCGACTTCGTCTACAGGCGGACAC
GTTCTATATTCGATGTCGCAGTCTCAGTGCACAAGAACATTCAGGAGAGGGACTTGGAAG
TTGGTCGGAACGTTGGAAACGCGGTCCTTCGCTGGCTCGACCGCATGAAGCCATCGGCAC
AGATCCGCCCCCACCCTCCAGGCCCGCCAGGCGGCAGCCCGGAGCAACTCAGGCACCTCT
CGACCATGAACAAGACCGCAGGAGCTCAGAAGCCCGCCTCCAAGACCTCCACGCACGACT
CAAGCGGGAAGATGCTGTTCTCGCCCCTGAACATCCGGCCCAAGTCCTTCCCTATCCTCC
CCACAATGATGCAGTCCACCAGGATCAGCGCGAGCAGCCAGTGCAGGCGCCTCTCCACCT
CGCCGTTCCCTTCTGTCACCGCCAGGAGGAAGGACATGATGGAGGGCGTCTTCCGGAAGG
ACATTGCCCAGCTAATGGTGTAAGGGATGTCTGTAGGTAGCTGTACTGCTTTCTATGACT
TTGAACACTGTTTACTTGACTGGAATTTGGCCTGGAGCAGAACTTGTCACTGGATCTGTA
ATAATGGTGGAGTGCTGAACATAATCGCTGTTGCTCCGCCTGTTTTTGGCCAATATACAT
TTTCTGACAAATCATCATACGATGGGACTTGGATAAAAAAAAAAAAAAAAA



Homology of Contig U35_23297 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os02g03560.11933e-98protein|expressed protein
Brachypodium v1_2Bradi3g02690.11945e-113
Arabidopsis v10None