barSeed - Barley Seed Development Database

Probe CUST_12860_PI390587928

Source Contig U35_4798

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12860_PI390587928	Hv_44K_v2	TATTCGGTTTAGCAATAACATTCTGACGGACGTACCAACGAGGTTTTGACGGTTAAAAAA	1072	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.968	2.001	1.197	0.626	0.315	0.228
Raw	260.061	400.020	213.859	173.106	31.216	25.254

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56805.1	3408	3e-21	3354 - 3407	100	54 / 54	plus	ABC13411
JLOC1	JLOC1_36775.3	3014	2e-21	2931 - 2984	100	54 / 54	plus
JLOC1	JLOC1_36775.2	3313	2e-21	3230 - 3283	100	54 / 54	plus
JLOC1	JLOC1_36775.1	3329	2e-21	3246 - 3299	100	54 / 54	plus
Harvest35	U35_4798	1143	3e-25	1073 - 1132	100	60 / 60	plus

Contig Sequence (1143 bp)

>U35_4798 1143 Hv_44K_v2
GTAAGTTCAGCTGTTGCACCTCCAGTCAAATACTCAACCACAGCATACAAACCTGGTGCC
AACACTGGAAGCCAGACATATGCTGTAACGCCTGGTGCCTATGGAACATATGGTTCTAAT
CCATCAGTCTATACAAATAACAACGTGGTGGCAAGCGGAACTTCGGCAGAGAACGGTGAT
GTCAGTGGATCACAATTCAAAGAAAATAACATCTATATTGCCGGACAGCAGAGTGAAGGC
TCCACTGTCTGGATTCCTGCACCTGGGCGGGATCTATCTGCTCTCCAGTCTAGCTCCTTC
TATGGCCTGCCTCCACAGGGGCAGCACCTGGCATTTGCCCCTGCCCAAGCTGGTCATGGC
GCCTACGGAGGGATGTACCATCCAGCACAGACTCTTGCTGGAGCTGCCGTGCATCCTCTT
CTCCAGCCATCGCAGACAATTGCTGGAGCTGTTGAAATGGTTGGGCCGCCTGCCAATGGT
TATCAGCAGCAGCAACATGCTCAGATGAACTGGGCTAACTATTGACCACAGCCCGTATAT
TCTTGCGAGTAGCCACCATAGGATGAACAAAGAGAGCAGTCATTTGTTGGATACCTCAAA
AGTGTTGGTAAAGGAAGTTTTCAAGAGTTTTCAGCATAGGGGGTGCCTGATCAAGAGTGT
ATATATCATCAAGCATGGGTGATTTGCAGGGAAGGGTTGCAGATTCCCAGATGGTCTAAG
TGTTTGTTCGTCACTGGTTTGATTTGTAGCAGGAACTGACCATTATGTTAGACAACGAGG
GTCTATGCAGGTACCTGTTCTTTTGCCTCACACCCCCACATCGTTTTAAGTTTTGCTGCA
AGAAAGTTCCGAGCTTCGTCTCTCTTGAGGTAATAGATGCTCTGGACTTCGGAGTCATGG
TATGGAAGTGAGCTAGGGGGATTTTCATTCTTTCCGCTGCTTTACATGTAAAGTAGTAAA
TTTTGGTGCTACGAGGACATGTCTGTACTGTTTGTACTTGGGTGTAATATGAACAGTAGT
ATAAACCAATCCCGAAGTTGCAGCAAAGCTTTATTTCTTTTGTGTTTTCTGATATTCGGT
TTAGCAATAACATTCTGACGGACGTACCAACGAGGTTTTGACGGTTAAAAAAAAAAAAAA
AAA

Homology of Contig U35_4798 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g08670.1	793	1e-85	protein\|protein of unknown function DUF1296 domain containing protein, expressed
Brachypodium v1_2	Bradi4g08887.1	818	9e-107
Arabidopsis v10	None