barSeed - Barley Seed Development Database

Probe CUST_12858_PI390587928

Source Contig U35_21800

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12858_PI390587928	Hv_44K_v2	GTACACACATCTCTCAGTTTGAATTAAGTAGTAATAGACATGTGCGCATTTCGTTTTCAA	996	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.759	0.736	1.345	1.357
Raw	3.027	2.978	3.783	6.442	3.177	5.501

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57803.2	2538	3e-21	123 - 176	100	54 / 54	minus	ABC16350
JLOC1	JLOC1_37523.2	624	2e-21	571 - 624	100	54 / 54	plus
Harvest21	ABC16350	1071	3e-25	997 - 1056	100	60 / 60	plus	ABC16350
Harvest35	U35_21800	1071	3e-25	997 - 1056	100	60 / 60	plus

Contig Sequence (1071 bp)

>U35_21800 1071 Hv_44K_v2
TCGTCCTCCTCCTCCTCCTCCTCCTCCGGCTAGCGCTATCCGATCCGAGGGAAAGAAGAG
AGAGAGAGGTCAGGGGGAAGGTAGCAAGCAAGCAAGGAAGGAAGGAGGCAGGATGGGGCG
CGGGAAGGTGGAGCTGAAGCGGATCGACAACAAGATCAGCCGGCAGGTGACCTTCGCCAA
GCGCCGCAACGGGCTGCTCAAGAAGGCGTACGAGCTGTCGGTGCTCTGCGACGCCGAGGT
CGCGCTCCTCATCTTCTCCAGCCGCGGCCGCCTCTTCGAGTTCTCCACGTCCTCATGCAT
GTACAAGACACTGGAGCGGTACCGCAGCTGCAACTTAAACTCTGAAGCAACTGCAACTCC
AGAGACTGAACTAAGCAATTACCAGGAGTTTTTAAAGCTGAAGACAAGAGTTGAGTTCCT
GCAGACAACTCAGAGAAATCTTCTTGGCGAGGACTTGGGCCCACTTAGCATGAAGGAACT
TGAGCAACTTGAGAACCAAATTGAGGTCTCTCTCAAACAGATCAGGGGGGCAAAGAGCCA
ACAGTCACTTGATCAGCTCTTCGAACTCAAGCGCAAGGAACAACAACTGCAAGATGTTAA
TAAAGACTTACGAAAGAAGATACAAGAAACTAGCGCAGAAAGTGTGCTGCAGATGTCTTG
CATGGATGTTGGACCTAGTGGCCATGCTTATCAAGCTAATGAACAGGAACTTTTTCATCC
TCCAGCTTGTGACCCTTCCTTGCGTATGGGGTATAATCATGATTACCTGGATCACATGAA
CAATGAATGAAGGGATGGTCAAGCTGATGCCCTAATAGCAAGGACATCGTGCGTTGGGTC
GATGTGATAATATATTTCAATGTAATGCTCTCTTTTACCCGTGTGTCCTAGCTTAAAGCA
GCTTATTATGTACGTATTAATCAAGAGCTTATGTTGTATTCTATTTTGAACTGAAGAGAG
GAATTATCTAATTAATTCTGCTGGATGCTCAATGGAGTACACACATCTCTCAGTTTGAAT
TAAGTAGTAATAGACATGTGCGCATTTCGTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_21800 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06750.1	226	4e-119	protein\|OsMADS5 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi1g48520.1	228	2e-136
Arabidopsis v10	AT1G24260.2	251	9e-73	\| Symbols: SEP3, AGL9 \| K-box region and MADS-box transcription factor family protein \| chr1:8593790-8595862 REVERSE LENGTH=251