barSeed - Barley Seed Development Database

Probe CUST_12851_PI390587928

Source Contig U35_21807

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12851_PI390587928	Hv_44K_v2	TTTTGAGCACCCTTTGGAATGCAGCTGATTGATGTTACCACCTTTGGAGCGACTTACGTT	650	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14374.1	956	2e-24	526 - 585	100	60 / 60	plus	None
MLOC	MLOC_14372.2	1915	2e-24	1543 - 1602	100	60 / 60	plus	ABC49741
MLOC	MLOC_14372.1	2882	2e-24	2620 - 2679	100	60 / 60	plus	ABC49741
JLOC1	JLOC1_9820.1	2949	8e-25	2521 - 2580	100	60 / 60	plus
Harvest21	ABC16146	723	3e-25	651 - 710	100	60 / 60	plus
Harvest35	U35_21807	723	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (723 bp)

>U35_21807 723 Hv_44K_v2
GCATGGTTTCAACCTGAAGAGGCTTCTGCATTACGAAAGAAAATGAAGACCCTGCTTCAT
CAGTTGTTTGAGGAAGCGAATCCCAGTAACAACAGTACATCGGAGCAGACAGCGTGTCAG
TTGCTTTTGGAAGCTAAATCTGCAAACAATGTAATGGAGCCGGCAACGTCAGAACACCCT
TTGGAAGTCGGTTCAGGTTCAGCTGAGGTGGCACCAACGTCTGAACGCCCTTTGGAAGTC
GGTTCTGCTGAGATGACACCAACGTCTGAACACCCTTTGGAAGTCAGTTCTGCTGAGATG
TCACCAACGCAAGAACATCCTTTGGTGGGCAGTTCGGCTGAGATGACACCAGTGCAAGAA
CATCCTTCGGTGGGCAGTTCGTCTGAGATGACACCAGTGCAAGAACATCCTTTGGTGGGC
AGTTCGGCTGAGATGGAACCAGTGCAAGAACATCCTTTGGTGGGCTGTTCTGGTGAGATG
GCACCAGCGCAAGAACATCCTTTGGTGGGCAGTTCGGCTGAGATGGAAACAACGCAGGAA
CATCCTTTGGCGGGCAGTTTGGCTGAGATGGAACCAACACAAGAACATCATATGGTCGGC
AGTTCGGCCGCGCAGAAACCTTTGGAAGGCACTTCGAACCGACCAACAAGTTTTGAGCAC
CCTTTGGAATGCAGCTGATTGATGTTACCACCTTTGGAGCGACTTACGTTGCCCGTAGAA
ACC

Homology of Contig U35_21807 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None