- Probe CUST_1284_PI390587928
- Source Contig U35_42923
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1284_PI390587928 | Hv_44K_v2 | AGGCGGCCGGGCGTACCTTCAAGAAAGCCGAGGAGTCCGACGAAGAAGAGGACAACGGCG | 198 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 24.367 | 9.165 | 1.639 | 0.653 | 0.934 | 0.773 |
| Raw | 286.799 | 161.846 | 24.455 | 15.032 | 7.984 | 6.757 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_24710.1 | 397 | 2e-24 | 57 - 116 | 100 | 60 / 60 | minus | None |
| Harvest21 | ABC38929 | 258 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_42923 | 258 | 3e-25 | 199 - 258 | 100 | 60 / 60 | plus |
Contig Sequence (258 bp)
>U35_42923 258 Hv_44K_v2 GGCGCTCCAGCGCGCGGCGTCGCGCGGCGCACGCCGTGCCGCAGAGCTTCGGGCTGTCGT CGCTCCTCGCCGACGGCGTGGAGGGGCAGCAGCTGCTTCACGCGGGGGTGGCCATGGCCG TGCCCGTGAGGCCGGGTCACGGCGCCGCGGCGGCACCGAGGCAGTCGGCGCCGGTCAGGG TGCCGGTGTGGCCGGGGCAGGCGGCCGGGCGTACCTTCAAGAAAGCCGAGGAGTCCGACG AAGAAGAGGACAACGGCG
Homology of Contig U35_42923 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |