- Probe CUST_12849_PI390587928
- Source Contig U35_21809
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12849_PI390587928 | Hv_44K_v2 | TTTTTGAATCGTCAGGACCATGAGCAACAGAGATACAACATGAATGAATGCCTTCAAGCG | 650 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.421 | 2.953 | 1.146 | 0.676 | 0.870 | 0.782 |
| Raw | 27.356 | 39.116 | 12.399 | 10.736 | 3.238 | 4.179 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52640.1 | 742 | 2e-24 | 682 - 741 | 100 | 60 / 60 | plus | ABC17091 ABC39570 |
| MLOC | MLOC_52639.5 | 1498 | 2e-24 | 731 - 790 | 100 | 60 / 60 | minus | ABC17091 ABC39570 |
| MLOC | MLOC_52639.4 | 2595 | 2e-24 | 1664 - 1723 | 100 | 60 / 60 | minus | ABC17091 ABC39570 ABC49960 |
| MLOC | MLOC_52639.2 | 3512 | 2e-24 | 2588 - 2647 | 100 | 60 / 60 | minus | ABC17091 ABC39570 ABC49960 |
| JLOC1 | JLOC1_33750.1 | 1745 | 8e-25 | 707 - 766 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33749.2 | 2834 | 8e-25 | 2467 - 2526 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_33749.1 | 2829 | 8e-25 | 2462 - 2521 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC17091 | 739 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus | ABC17091 |
| Harvest21 | ABC39570 | 355 | 1e-23 | 20 - 79 | 98 | 59 / 60 | minus | ABC39570 |
| Harvest35 | U35_21809 | 743 | 3e-25 | 651 - 710 | 100 | 60 / 60 | plus |
Contig Sequence (743 bp)
>U35_21809 743 Hv_44K_v2 GACACAAGGCCGGCCACGGCGCCGGTGTCCTCCTCGCCTACGCTGCGGACGAGCCAGCCG CGCCGTCGTGTCGCACGGGGGATGTCGGGGCAGGCGCCGGCCGTGGTAGCGTTCGCGCTG GCGGCCGCCATCCTCTCCACGCCGCCGCCGCAGTCGGAGAACTTCTCCAACATCCCGCCC ACGCTCTCCGGGGACGACAAGGCGCAGGTGAGGATCAAGCACCCGAAGTCGGCTAAGGCG CTGCAGTGCACCTCCAAGTGCGTCGCCACCTGCATCCGCGGCGGCGAGGGGCCGCTCAAC GTCCGGCGGCCCCTCGTCGTCTTCAAGGAGCAGTTCCGCAGCCGCCTCTACTGCCTGACA GAGTGCTCGGACATCTGCAACCTCATCAAGGACGGCGAGGACGGGCCATGAGACCAACGA ACGAAACTCTGCTCCTGCCCGGGAGGAGCGGCGGGCAAGTTCAGGGCCACACCGGGACTG CATTTCTCACATGGCACAGCGGAAATTCCGAAAGAAAACCACCGGCGATCATGCGGTGAA GAGGTCATCGTAGGGAGGGAGCATGCATCGTAATGGAATTTCTTTAACTTCTACCACTTG CTTATAGCTGTGCATGACACAGCAGGCAGAGCAATACAATACAGTACATTTTTTTGAATC GTCAGGACCATGAGCAACAGAGATACAACATGAATGAATGCCTTCAAGCGATAAATTGAA TTATATAAAAAAAAAAAAAAAAA
Homology of Contig U35_21809 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g34500.1 | 114 | 9e-61 | |
| Arabidopsis v10 | None |