barSeed - Barley Seed Development Database

Probe CUST_12835_PI390587928

Source Contig U35_19504

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12835_PI390587928	Hv_44K_v2	ATGTATGGTGCACTTTCTGTTGGAAATTGTACACTATACAGTCTACCCTTTCTGTCTAAA	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17062.1	257	7e-23	103 - 159	100	57 / 57	plus	ABC12733
JLOC1	JLOC1_11783.1	248	4e-23	100 - 156	100	57 / 57	plus
Harvest21	ABC12733	698	3e-25	629 - 688	100	60 / 60	plus	ABC12733
Harvest35	U35_19504	762	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (762 bp)

>U35_19504 762 Hv_44K_v2
GGACGCACCAATCCAAACCCATTTCCCCTTTGGTCTGGTTCCTGCCCTCCCCACACCGCG
TCGCCGCCGTCCGGCTCCTTCTTCTCCGCCTGAACCCAACGGAGCAAGCCTCCAAGCGGA
GCAAATCTCTGTCCGTCTCTCTACTGGATCTGGACCGGCTCCCGCGACTCCTCCTCCCTC
TGTCGCAGCGCCGAGTTGCTGGACCAGATGGTGGGATTCGGCAGCCTCGCGCCCAAGACC
AAGAACCTAGTGGTGGGCAGCGGGCTGACAGGGTTCGTCTTCGGGGTCTACTACTACACC
ATGAGAGCTGTCGGCAACACTGATGAGCTGCAGGTCGCCATCGACAAGTTCGAAGACCTG
AAGAAGAGGGACGATGCAGCCACCCCCGCCGCAAACCCCTCCACCCCAGGCTCATCGTAG
GCGAAAACATGCTCTCAAACTTCTGTTTCCCTGGACCGAGCTTCTAAACTAGTTACCTCA
TAACCAGAGCTCAGAACCTTGGTTTGGTTTGTATGATAATGATGGGTCATGTTAGATAGA
GCTTTTTATGGCATGGGTGGGAGTCCAGAATTAGTAATGCTTTTGTGTTAATGGTGGCCG
CGGTGCCTGGAAGTTCGATATATTGCGCTACTGGAGCAGATTTTTTGGGATGGCCTTTGG
ACCAATGTGCCTTTTCAATTGGGATACATGGAATGTATGGTGCACTTTCTGTTGGAAATT
GTACACTATACAGTCTACCCTTTCTGTCTAAAAAAAAAAAAA

Homology of Contig U35_19504 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None