barSeed - Barley Seed Development Database

Probe CUST_12834_PI390587928

Source Contig U35_19505

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12834_PI390587928	Hv_44K_v2	ATTGAGTTATTGACTAATACTGTACTTGTGAACAAGCGTTTGCTGCATTTGGCCGTTGAC	1303	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.530	2.266	1.632	0.957	0.352	0.478
Raw	166.665	374.102	248.098	255.381	29.378	44.401

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16595.1	1875	2e-24	1761 - 1820	100	60 / 60	plus	ABC11769
JLOC1	JLOC1_11436.2	2165	8e-25	1857 - 1916	100	60 / 60	plus
JLOC1	JLOC1_11436.1	2486	8e-25	2178 - 2237	100	60 / 60	plus
Harvest21	ABC11769	1426	3e-25	1302 - 1361	100	60 / 60	plus	ABC11769
Harvest35	U35_19505	1465	3e-25	1304 - 1363	100	60 / 60	plus

Contig Sequence (1465 bp)

>U35_19505 1465 Hv_44K_v2
GTTCTATTAGTGGAGGAGTGAACAGACAGGGGATTGCATTTTACAACAGCCTTATCAACG
ACGTCATAGCTAAAGGGTTGAAGCCGTATGTGACACTGCACCACTGGGACACACCCCTTG
GGCTAGAGGATAAATACGGTGGCTTCCTCAGTGAAAAGATCGTGAAGGACTACGTGGACT
TCACGGACGTGTGCTATAACGAGTTCGGCGACCGCGTGAAGCACTGGACGACGTTCAACG
AGCCGTGGACGTACAGCACCTACGGCTACTCCACGGGCGTCTTCGCGCCGGGGCGGTGCT
CGCCGCACGTCTCGGCGTCCTGCGGCGCCGGCGACTCGGCCCGGGAGCCCTACATCGTGA
CGCACAACATCCTGCTGGCCCACGCCGCCACCGTCGCGCTTTACCGGCGCAAGTACCAGA
AGGCGCAGGCCGGCGAGGTGGGCATCACGCTGGTGTGCCACTGGTACCTCCCCTACAGCA
ACTCCACCGCCGACAAGGCCGCCGCCAAGCGCCGGGTGGAGTTCATGCTGGGGTGGTTCA
TGGACCCGATCGTGCACGGCGACTACCCGGCGTCCATGAGGAGCTGGCTCCGCGCCCGGC
TGCCGGCGTTCACCCCGGCGCAGACGGCGGCGCTCAGGGGCTCCTACGACTTCGTCGGCC
TCAACTACTACACAACCTACTACGCCATCGCCACGCCGGCCCCGGCCACCCCGCTCCAGG
GCTCCTACGACGCCGACAACCGCTCCAACGTCACCGGCTTCCGCGACGGCAAGCCCCTCG
GCCCAGGCAGGCCTACACCGAGTTCCTCTTCGTGTACCCGCCGGGCATCCACGAGCTGAT
GCTCTACGCCAAGCGGAGGTACAACAACCCGGCCGTCTACGTCATGGAGAACGGCATCGA
CGAAGGCAACAACAGCTCGCTGCCCATCAAGGAGGCCCTCAGGGACCCAGCCAGGATCAA
CTACCACTACAAGCACCTCCTCTTCCTCAACCTCGCCATCAAGCAGAAGGTGAACATCAA
GGGCTACTTCACGTGGACGTTCATGGACTGCTTCGAGTGGGGCGACGGGTACAAGGATCG
CTTTGGCCTCATATACATCGACCGCAGCACGCTCAAGCGCTACCCCAAGGACTCCAGCAA
ATGGAGGGGCAGGTTCCTGAAGAAATGATCGACGATCCATCTGCCATGCGCGGGCCTGGT
GTCTCGGCTCAGGCGGCCTTCGTTTCTAGTACTATCTGCATGCATATGCTGCGCGCATGC
ATGGTTGGTTGTGAGTTTCAATTGCGGAGACGGCATCGGCGATATTGAGTTATTGACTAA
TACTGTACTTGTGAACAAGCGTTTGCTGCATTTGGCCGTTGACCGTGCGAAGAAATAAAC
TTGAGGCTGAGGAGTGTTATTCCCGGCCCATTCGGTATGAGAGCGGCCGCTCGAGCATTA
TCGAAGNGGCCCAATTCGCCCTATA

Homology of Contig U35_19505 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31430.1	501	2e-152	protein\|Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed
Brachypodium v1_2	Bradi3g40007.1	502	4e-134
Arabidopsis v10	AT2G44480.1	517	7e-101	\| Symbols: BGLU17 \| beta glucosidase 17 \| chr2:18359780-18363001 FORWARD LENGTH=517