- Probe CUST_12831_PI390587928
- Source Contig U35_19508
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12831_PI390587928 | Hv_44K_v2 | TGCTCCAGTGGCAGCGCACGGGATTCCACTTCCAGCCCGAGAAGAACTGGATGAACGACC | 522 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66722.1 | 2988 | 2e-24 | 1877 - 1936 | 100 | 60 / 60 | minus | ABC02490 ABC02491 ABC02492 ABC02499 |
| MLOC | AK361559 | 2432 | 7e-23 | 490 - 549 | 98 | 59 / 60 | plus | ABC02490 ABC02491 ABC02492 |
| MLOC | MLOC_60412.1 | 2569 | 7e-23 | 1734 - 1793 | 98 | 59 / 60 | minus | ABC02490 ABC02491 ABC02492 |
| JLOC1 | JLOC1_44006.1 | 2956 | 8e-25 | 1042 - 1101 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39393.1 | 2669 | 4e-23 | 704 - 763 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC21363 | 521 | 3e-25 | 461 - 520 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC02494 | 597 | 1e-23 | 439 - 498 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC02490 | 2190 | 1e-23 | 426 - 485 | 98 | 59 / 60 | plus | ABC02490 |
| Harvest35 | U35_19508 | 584 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_237 | 597 | 1e-23 | 439 - 498 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_4 | 2256 | 1e-23 | 426 - 485 | 98 | 59 / 60 | plus |
Contig Sequence (584 bp)
>U35_19508 584 Hv_44K_v2 TCGAGCACTGTTGGCCTGGCTCGGCAAACACGCGCAGGCGCACACCTTCTTCTCGTTCTT GTCAAGATTAGCAGAGGTGATAATCGATCAGTCCTCCCACCAATTCCTCTCCCCCTTCTT TGGATTCTCCTCCGTCTTTTCCCATGTCAATGGAGGCCGGAGACCGCGGCGCGACGCCGG CGCCGGTGCCGTGGTCCTACGGTCGGCTGCCGGACGATGACGAGGCCCAGGCTGGGCGCG CGCGCCCTGGCCGGACCGGGCCGGTGTGCGCTGCAATGCTCATGACTTTGGCCGCCGTGC TCCTTGCTGTCGCCGCGCTCGCCGGGGTCAGGCTTGCCAGCGAGCTGCCGGCGTCGGGCA TCGTCATGTCCGGCCACCCGGCCGAGGTTGACGCGGCGCCGTCGTGCACCAGCAGCCGGG GGCCTGAGTCCGGCGTCTCGGAGAAGACGTCCGGCGCCGGTGCACACGGCGGCATGCTTG GTGCCGACGCTGGCGGCAATGCGTTCCCGTGGAGCAATGCCATGCTCCAGTGGCAGCGCA CGGGATTCCACTTCCAGCCCGAGAAGAACTGGATGAACGACCCC
Homology of Contig U35_19508 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |