barSeed - Barley Seed Development Database

Probe CUST_12829_PI390587928

Source Contig U35_21820

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12829_PI390587928	Hv_44K_v2	CGCAATTGCATGAAGGAATTAATGAGCTGGAGGACAGGAAACAAAAAGCGATTTGTATAG	635	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64401.1	2592	2e-24	1936 - 1995	100	60 / 60	plus	ABC20085
MLOC	MLOC_64401.2	1522	2e-24	594 - 653	100	60 / 60	minus	ABC20085
JLOC1	JLOC1_42290.3	946	8e-25	577 - 636	100	60 / 60	plus
JLOC1	JLOC1_42290.2	1591	8e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC16975	750	3e-25	636 - 695	100	60 / 60	plus
Harvest35	U35_21820	750	3e-25	636 - 695	100	60 / 60	plus

Contig Sequence (750 bp)

>U35_21820 750 Hv_44K_v2
GCACCCCGCCTCCCTCCCGTGCACGCAAGGCACCCGGGGGCGCCGAAAGCGACGGGGGGC
GCGACCGCGTGAGCTTTAAACCCGCCCGGCCTCCCCGCCGCACTCCCCACCGCCGCTCGC
CGAGCTCACCCGCCGCCGGAGCTGGACCGAGACCTCGGGGGAGCGACCCAGCGGATCGAG
CGGCTACTAGGGTTTGGGTGCCGGATTGGTGGCGCGGAGCGGAAGGGGATAGCGGTTGGT
GGCTTGGCGCCGGAGGGGTTGGGGATTTTTTGGATGGTCGCGGCGGCGCCGCGCTGGAGT
AGTAGCACTGGTGCCGCTCCTCCTCCTACCCATGGGCAGGTCGTTCAGGGACTCGCTCAA
GCTGCTCGAGGCCGACATCCAGCACGCCAACTCGATTGCTTCTGAATTTCGAAGGGAATA
TGATGGTGCCTGTCTTCAGATGAGGATGTCATACTGTCCAGCTGCACACCTTTTCCTTTT
TCTTGTGCAGTGGACAGACTGCAACCTTGCTGGTGCTCTTGGGCTGTTGAGAATTCTCAT
TTACAAGGTTTATGCTGATGGGACAACCACCATGTCCACTCATGAAAGGAAAGCGAGCAT
CAGGGAATTCTATGCTGTAATTTACCCTTCTCTGGCGCAATTGCATGAAGGAATTAATGA
GCTGGAGGACAGGAAACAAAAAGCGATTTGTATAGAGAGGTATAGAAGACGAGAGGAGGA
TCACANAAGGGTGATCTCAGAGATTGATGA

Homology of Contig U35_21820 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46700.4	203	4e-66	protein\|zinc finger, RING-type, putative, expressed
Brachypodium v1_2	Bradi1g18760.1	243	1e-67
Arabidopsis v10	None