barSeed - Barley Seed Development Database

Probe CUST_12819_PI390587928

Source Contig U35_19511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12819_PI390587928	Hv_44K_v2	GCAGCTATTCGTTTTATTGGGCACATATTATATTGCAGCTGTTCGCGTGTTTCCAAAAAA	1115	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.436	1.499	1.196	0.811	0.359	0.422
Raw	4077.460	6585.157	4618.153	4855.970	767.727	988.148

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC13117	1191	6e-22	1116 - 1169	100	54 / 54	plus	ABC13117
Harvest35	U35_19511	1186	3e-25	1116 - 1175	100	60 / 60	plus

Contig Sequence (1186 bp)

>U35_19511 1186 Hv_44K_v2
CAAGAGCTGAGTGCTAAGCTTGATAGAAAGACAAGTGGCGAGCAAAAGGTTAGGATTCAG
AAGACCAAAAATGCTCTTAAAACTGCAGAGGAGGAACTGATGAAGGTGCAGTTAGAAGCA
ACAGCAAAATCAGAGCAGCTCGGAGAGGTTCATGGAGCATGGCTGCCACCTTGGTTAGCA
GCACATGCAGCTCACTATATGGAGTTGATATCGAGTCACTGGAGTGAACATGGGAAACCT
GCTGTCAACAATTTATTGCAGAAGACATCAGAGAAAACAGTGCAGGCGAAGGAATGGGCC
GAACCCCATATAGAAACTGCTAAGGCGAAATGGATTCCTGTCATTAAAGAGAATTGGGCT
ACTGCAAAGAAAAATGCGGAACCTTATATGCAAATGGTCTCAGCAAAATCAGTAGAGCTT
TATCAAGTATCAAAGGATGCTATCTCACCACATGTTGTGAAAGCACATGAGCTTGCTGAT
CCTTATTTCCAGGAAGCCAAGAAATTATCAAAACCTTATATTGATCAAGTTGCTAAGGCC
AGTAAACCACATGTTGACAAACTTAAAACTACCCTTAAGCCTTACACTACAAAGGCAGGC
CAGGAATATGAGAAGCTTCTTGAGACAGCTACATTATACCATCAGCAGGCTCAGGCTACT
ATCTTGGATTACATGCACCAACATGAATTTTTAAAACAATTTGCGAATGGAGAGTTGGTG
TGGTTTCTGGCTGCTGCTTGGCTTCTTATGCCCGTATATGTTTTATACATACTCCTAGCT
GAAGTCTTCTGCGTCAGCAGGAAGAAGAAAATCCCACGGAGTGGTAAGGGCAAAGTTTCG
GTCAATGGCCATCGGAGACACAAGCGCCGTCATGCTGACAAGTAGACTTTAGACTATGTG
TTTGCCTATCTTCCTCAGCACTGTAGTTGAAGAAGATCAGGTACGATTCATTCACTGACA
AGTCTGCTGGCTACAAATTGGGAGATGCCGGGTCCTGGTTAAATCTTGTGTAATATATAC
CCTGAGTTATACTGCACGCAAACCGTGTCTCCATGTATTTTAGCGACCGTTTTTGTACGA
TCACGTAGCTGAGTAGGGATTACGAGGTTAAATATGCAGCTATTCGTTTTATTGGGCACA
TATTATATTGCAGCTGTTCGCGTGTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32250.1	447	2e-115	protein\|DNA repair ATPase-related, putative, expressed
Brachypodium v1_2	Bradi4g34150.1	454	9e-135
Arabidopsis v10	AT4G31340.1	437	7e-71	myosin heavy chain-related \| chr4:15205662-15208950 FORWARD LENGTH=437