barSeed - Barley Seed Development Database

Probe CUST_1280_PI390587928

Source Contig U35_42926

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1280_PI390587928	Hv_44K_v2	TGCTTACTGTGTTGCCAAGTATGGTCCCAAATGGGTGCGCACAAGAACCATTCTCAACAC	523	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.381	0.763	3.105	3.446	1.086	1.143
Raw	7.876	22.783	85.062	145.024	18.171	19.495

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372941	2980	2e-24	1407 - 1466	100	60 / 60	plus	ABC11654
MLOC	MLOC_18231.3	1792	2e-24	462 - 521	100	60 / 60	plus	ABC11654
MLOC	MLOC_18231.1	2878	2e-24	463 - 522	100	60 / 60	plus	ABC11654
MLOC	MLOC_18231.2	2221	2e-24	463 - 522	100	60 / 60	plus	ABC11654
JLOC1	JLOC1_12610.1	2161	8e-25	465 - 524	100	60 / 60	plus
Harvest21	ABC38933	583	3e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_42926	583	3e-25	524 - 583	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_42926 583 Hv_44K_v2
TGCCCCACGACACGTCCCGCCCCATGAACGCCTCCGTCAAGCTGCAGCTCGCCGGGCAGG
TGCGCCGCACGCGCCCGGGCGCACCGCCTGGGACGCCCAACCCGATGTGGAACGAGGAGT
TCATGTTTGTGGCGTCCGAGCCGTTCGACGAGCCCCTGCTCGTCACCGTGGAAGACCGCG
TCGGGCCAGGCCGCGACGAGCCGCTCGGCCGCATTATGCTGCCCCTCAACGCTGCAATGC
CGCGCCATGACCACTTCGGCAAGCCCGTGGAGCCGCGCTGGTACAGCCTTGCGCGTCCCA
GCGACGACGGTGAGAAGAAGGAAGGCAAGTTCGCGAGCAAGATACAGCTTCGGATGTCGC
TCGACTTTGGGTACCATGTTCTTGACGAGTCGACTTACTACAGCAGCGATCTCCAGCCAT
CGTCAAAGCACACACGGAAGCCGAGCATTGGGATCCTTGAGGTGGGGATTCTGGGTGCGC
GCAACCTGATACCCATGAAGGCCAAGGATGGTCGCACCACCGATGCTTACTGTGTTGCCA
AGTATGGTCCCAAATGGGTGCGCACAAGAACCATTCTCAACAC

Homology of Contig U35_42926 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g35480.1	805	9e-112	protein\|anthranilate phosphoribosyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g24410.1	805	5e-118
Arabidopsis v10	AT1G22610.1	1029	2e-64	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr1:7994478-7997567 FORWARD LENGTH=1029