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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_12804_PI390587928Hv_44K_v2GAAGATATCACATTTCTCTGTCATACCATGTACTAGATGTCTATTGCATGAACATGTCAT808GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.1171.3151.4550.9170.2320.213
Raw 45.75588.37082.46080.8536.4836.406



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_53531.159472e-245876 - 593510060 / 60plus ABC16517
MLOCMLOC_53531.236582e-243589 - 364810060 / 60plus ABC16517
JLOC1JLOC1_34403.236458e-253574 - 363310060 / 60plus
JLOC1JLOC1_34403.158258e-255754 - 581310060 / 60plus
Harvest21ABC165179213e-25809 - 86810060 / 60plusABC16517
Harvest35U35_218359213e-25809 - 86810060 / 60plus



Contig Sequence (921 bp)

>U35_21835 921 Hv_44K_v2
TGAAAACAAAGCATTTAGGTTTTCACAAGGCACTCTGTGTTCTGATGGGGTGGAATTGGA
ATGTTGCTCCAGACACTTCTAAAGCCTACCAGTCTGTTCCCATTGAGGAAGTAAATGCCA
TGAGGGGAGATCTGATGGTATGGCCTCCAGTTGTCGTGTTACACAACAGCTCCCTCACAA
ACAAGGCAAAGGTCGCGGATGCAAAGATTGTGACAATAGAAGAAATCGAAGGTGTACTTG
CAGATATTGGGGTTGCATGTGACAAGGCAAAGATAACCCATGGAAGACCAGCCAACAAGA
GTGTTTTCGTGGCCAAGTTCCTACCAACAATATCTGGATTTCAGGAAGCAATGAGAATTC
ACGATCATTTCAGCTCTGAGAACCACGGCAAGGAAGAACTCCAGCAGATAATATGTGAGA
AAGGTAAGAGTCCAGTTCGTGCTGACAAACTCGAAGAGCTGCTGTATGCACACATTGCGC
TGGCTGAAGATCTCGGGTACCTGGACGACGAGATAAAGAAGCGATGCGTTGTCAGGAGCA
AGAACGATATCAAGGCCAGGGCAGATGCCACACTGAACCTAGAGTCCTGAAGCGACGTAA
CAAATGTAGATTATTTAGGTCATCTATATTTTGAACAGTGAAAGCTATACCCCTTATGCT
TAATCTTTGTGCTTGCTTGTCCAAGTGGCGGAAACCTGAAGAATATTCTACGGTAGTGTA
TTGAAGCTTCATGTCATGATCAAATCTTGTTAATATTTATGTTCCAGGTTCTTCATCTTA
AGTTTGATTCCTCTTACCTAACAAGTACGAAGATATCACATTTCTCTGTCATACCATGTA
CTAGATGTCTATTGCATGAACATGTCATTTTAAAATAAACTTGTAGCGAAGTTGACTTTT
TGGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_21835 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g41390.110407e-99
Arabidopsis v10None