barSeed - Barley Seed Development Database

Probe CUST_12802_PI390587928

Source Contig U35_21838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12802_PI390587928	Hv_44K_v2	AACTGAAGCTGAATAACAGAACAGTTTTGAGTCTTGCTCGGCCATGCTCTTTGTAAAAAA	1261	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.395	1.591	1.153	0.802	0.405	0.444
Raw	377.370	674.623	431.934	470.895	84.494	98.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58342.3	3292	9e-22	2535 - 2592	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.4	4398	9e-22	3641 - 3698	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.5	4137	9e-22	3317 - 3374	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.6	3132	9e-22	2312 - 2369	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.2	4330	9e-22	3491 - 3548	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.7	4221	9e-22	3524 - 3581	98	57 / 58	plus	ABC21277
MLOC	MLOC_58342.9	3224	9e-22	2411 - 2468	98	57 / 58	plus	ABC21277
JLOC1	JLOC1_37896.2	3487	5e-22	3315 - 3372	98	57 / 58	plus
JLOC1	JLOC1_37896.1	2389	5e-22	2217 - 2274	98	57 / 58	plus
Harvest35	U35_21838	1332	3e-25	1262 - 1321	100	60 / 60	plus

Contig Sequence (1332 bp)

>U35_21838 1332 Hv_44K_v2
CACGCGTCCGCGAGTCTTTGACATGGCACATTGCTCGAGATGTTTAATTCCATGGAGTGG
AAGTAACGGTATGTACATGATGGAAGTTGATAGGGTACTTAGGCCGGGTGGGTATTGGGT
ACTGTCAGGCCCACCCATTGGTTGGAAAATTCACTACAAGGGATGGCAACGGAGCAAAGA
AGATCTCCGGAGTGAGCAGAGAAAAATAGAACAATTCGCAGAACTTCTTTGCTGGAAGAA
GATATCTGAGAAGGATGGTATTGCCATATGGAGAAAGAGATTAAATGACAAATCTTGCCC
CAGGATGCAAGATAATTCAAAAGTTGCCAAGTGTGAGTTGACAAGCGACAGTGATGTATG
GTATAAGAAAATGGAAGCCTGTATAACTCCCCTTCCTGAGGTTAAAAGTGTGTCAGAGGT
TGCTGGTGGTCATCTAGAGCCATTTCCAAAGAGGCTCAATGCAGTACCACCTCGGATAGC
CCGTGGTTTTGTATCCGGGTTCTCAGTTCAAACATATCAGGACGACAATAAACTCTGGCA
GAAACATGTTAATGCTTACAAGAAAACCAATGACTTGCTTGATACTGGAAGGTACCGCAA
CATAATGGACATGAATGCAGGTCTTGGTAGCTTTGCTGCTGTACTGGAGTCTCCAAAGCT
GTGGGTCATGAATGTCGTTCCGTTCATTGCAGATACTAATACTTTAGGTGTAATCTATGA
GCGAGGATTAATAGGAATGTATCACGACTGGTGTGAAGGGTTCTCTACTTACCCAAGGAC
ATATGACCTCATACATGCTAACGGTGTCTTCAGTTTGTACCAGAACAAATGTAAATTTGA
AGATATACTACTGGAAATGGACCGGATCTTACGCCCAGAGGGCGCAGTCATAATCCGTGA
CACGATTGACGCTCTTGTAAAGGTGGAAAAAGTAGCCAATGCCATGAGGTGGGAGACAAC
ACTGGCCGACCATGAGGGCGGCCCTCGTGTGCCTGAGAAGATCCTCTTTGCAGTTAAGCA
ATACTGGACTGCCGACAGCAAGAGCCGCCGCTAACATGTCTGGATTATTGTTCTCGCTTC
TCTTCAGGATAACTCTGTCCCTGGCACTGGCAGTGTTCATTGCAAGTACACATTAGTCCG
CGTGTAGAGAACTGACGAAACCAAGCCGGCGATAAACCAGAGGAGAGTACTCTGTCTTCT
ATTTATGGTTCGTGTTGTATTTTTGTTTGTTTTTGTTCGTGTTGTATCTTAGAAATTCAT
GAACTGAAGCTGAATAACAGAACAGTTTTGAGTCTTGCTCGGCCATGCTCTTTGTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_21838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g26200.1	612	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g61130.1	612
Arabidopsis v10	AT1G26850.1	616	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:9301146-9303432 REVERSE LENGTH=616