barSeed - Barley Seed Development Database

Probe CUST_127_PI390587928

Source Contig U35_45899

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_127_PI390587928	Hv_44K_v2	AACGATCCAAATGGGCCACTATACTACAAGGGATGGTGCCACTTGTTTTACCAGTACAAC	216	GeneList: darkred MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.173	2.377	3.571	1.557	0.360	0.230
Raw	32.067	101.402	129.618	84.690	6.165	3.016

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5612.4	1887	7e-23	258 - 317	98	59 / 60	plus	None
Harvest21	ABC45285	348	3e-25	217 - 276	100	60 / 60	plus
Harvest35	U35_45899	348	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (348 bp)

>U35_45899 348 Hv_44K_v2
GGGTAGCTAAGCATTGTTAAATTTCCCTTCAGCCACTCAATGTGGAATCCGCTATGGTCC
GTCGGGCCATGGTTGCTACTGCTCCTTCTGCAGCTTGCCGGCGCGTCCATCCACGGGAGT
ATGGAGGCCGTGGCGCCCTTGCCGTCAGTGCCTGGGGGGGGGACCAACCCCTTGCTCAGG
ACAGGATACCACTTCCAGCCCCCCAAAAACTGGATTAACGATCCAAATGGGCCACTATAC
TACAAGGGATGGTGCCACTTGTTTTACCAGTACAACCCCAGAGGTGCCGATTGGGTCAAT
ACACTTTGGGCTCACTCGGGTTCACGTGACCTCATCAACTGGAACCTT

Homology of Contig U35_45899 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None