barSeed - Barley Seed Development Database

Probe CUST_12799_PI390587928

Source Contig U35_19520

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12799_PI390587928	Hv_44K_v2	AACTCTTTTTCTTTTGTACTCACAGGCCTTCCTTATTGAGGGAGGCATAGTGAATTTCCC	668	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371123	1743	3e-22	1685 - 1743	98	58 / 59	plus	ABC11411
MLOC	AK360169	1296	3e-22	1001 - 1059	98	58 / 59	plus	ABC11411
MLOC	MLOC_67781.1	4549	3e-22	2693 - 2751	98	58 / 59	plus	ABC10074 ABC11411
MLOC	MLOC_67780.2	727	3e-22	610 - 668	98	58 / 59	plus	ABC11411
MLOC	MLOC_67780.1	2129	3e-22	735 - 793	98	58 / 59	plus	ABC10074 ABC11411
JLOC1	JLOC1_44789.4	2888	1e-22	1817 - 1875	98	58 / 59	minus
JLOC1	JLOC1_44789.3	2934	1e-22	1863 - 1921	98	58 / 59	minus
JLOC1	JLOC1_44789.2	3157	1e-22	2086 - 2144	98	58 / 59	minus
JLOC1	JLOC1_44789.1	3659	1e-22	2588 - 2646	98	58 / 59	minus
JLOC1	JLOC1_44788.1	4216	1e-22	738 - 796	98	58 / 59	plus
Harvest21	ABC11411	731	3e-25	669 - 728	100	60 / 60	plus	ABC11411
Harvest35	U35_19520	731	3e-25	669 - 728	100	60 / 60	plus

Contig Sequence (731 bp)

>U35_19520 731 Hv_44K_v2
GCACGAGGCGCGCTCATCCACATCGGGCTCGCGGGATCCCCGCGCAGCCCCTTCCTCTCC
CACGAGATTCGGGGCGAGGACGGCGCCGGGGACAGCGACCTAGGGTTCTCCAAGTGGGCC
GACAAGCTCCGCGGCGGCGCACCAGGTGACAAAGAAGGCCAGGATAAATGGAAGCTCGTC
AGCAAATGGAAACCCACGACCAAAGGCACACTCAAGAGGATGTACCGAGTTCCTTCGAAG
GAAGAAGGTCGCCGAATTCTTAAAGAAATTGCTTTGGTTCTATCTGAAGATGACAATTTT
GTGGATGCTTCCACTCACAAGGGTTGTCAAATCAGGAGGGAGAGTGCGCATGGAGAGAGC
GTATGCTGCTACAATGTAAGAGCTTTGTTTGATGAGCTCCCTGGCCCTCACCTAGTTCTG
GAGATTACGCCTTTTCCTGTTGGAACCCTTACTGAGAATGACTACCGCAAGGCCGAGAGG
CTTGAAATGGTGCTGAGGATGAGTGCCTCCCTTTAAACCTGAAGAGCCATTTTCCACTTC
CACCTCATAACTCCTTTTTGCCCAGATTGTAAATTGTCTACCATTGGGTCTGTAAATTGA
TGTTGTGTTGCTAAAAGCTCCCCTTTAAACCCGAGTTCTGCTCAGCATTTTGAGATATTT
GAGGCCAGAACTCTTTTTCTTTTGTACTCACAGGCCTTCCTTATTGAGGGAGGCATAGTG
AATTTCCCATT

Homology of Contig U35_19520 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g41710.2	246	1e-101	protein\|expressed protein
Brachypodium v1_2	Bradi1g21770.1	249	4e-108
Arabidopsis v10	AT3G32930.1	249	2e-69	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:13489595-13490704 FORWARD LENGTH=249