barSeed - Barley Seed Development Database

Probe CUST_12794_PI390587928

Source Contig U35_19524

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12794_PI390587928	Hv_44K_v2	AGCCGTTGTGCCTCTTCCATCTAAGCTGTGCAATATTTTTAGGAAGCTTGTTAGCTAATT	2242	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51255.1	1889	7e-23	1770 - 1830	98	60 / 61	plus	ABC11724 ABC38669
MLOC	AK371224	2386	3e-22	2331 - 2386	100	56 / 56	plus	ABC08790 ABC11724 ABC38669
JLOC1	JLOC1_32730.1	1683	4e-23	1506 - 1566	98	60 / 61	plus
Harvest21	ABC11724	2326	3e-25	2243 - 2302	100	60 / 60	plus	ABC11724
Harvest35	U35_19524	2326	3e-25	2243 - 2302	100	60 / 60	plus

Contig Sequence (2326 bp)

>U35_19524 2326 Hv_44K_v2
CAGCTGTCCCTGTCCCTCCCCCCAAATTCCCCGACCCACCGCTCCCAAATCCCATCCAAA
TCCCTCCACATCCTCCAAAGATCGGATTTTCGGAGTGCCTCCGCCCCCAGATCGGGGAGG
GATCCCCGTTTCCTCTGGTGGGTCGGTCCCCGCCGTCCTTTTCTTGATCTTTTTCCTGGA
GGGGAGGTTCTTGGATGGGGTGCCTGCCGTGCTTCGGGTCGAGCAGCAAGGGGGAGCCCG
TCAAGAAGGGAACCGCGCAGAAGGACGTTCCGTCGGATCGCCGCGCCACCGGGGTCGGAT
CAGATAAATCAAAACCACAGGGTTTATTGGAATCTAAGAAGGATACAGTTATCCCAAGGG
AGGGGAACAATCAACATATTGCAGCTCACACATTCACTTTCCGTGAGCTTGCTGCTGCCA
CTAAGAACTTCAGACAGGATTGCCTATTGGGCGAGGGAGGTTTCGGCCGTGTATATAGAG
GACGTTTGGACAATGGACAGGCTGTTGCAGTTAAGCAACTTGATCGCAATGGACTTCAAG
GAAACAGAGAGTTTCTGGTTGAGGTCCTTATGCTCAGTCTATTGCACCATGATAACCTGG
TAAACTTAATTGGATACTGTGCTGATGGGGATCAACGTCTTCTTGTATATGAATATATGC
CATTGGGATCACTTGAGGATCATTTGCATGATATTCCGCCTGAAAAGGAACCTCTTGACT
GGAATACACGGATGAAGATTGCTGCTGGTGCTGCCAAGGGATTAGAATACTTGCATGACA
AGGCAAGTCCTCCTGTTATTTACCGGGATTTCAAGTCGTCAAACATTCTTCTTGGCGAAG
GGTTTCATCCAAAGCTATCTGACTTTGGCCTTGCAAAACTTGGCCCTGTTGGTGACAATA
CTCATGTTTCAACACGTGTTATGGGAACTTATGGCTACTGTGCCCCAGAGTATGCAATGA
CCGGACAGCTTACAGTTAAATCTGATGTGTATAGCTTTGGTGTTGTGTTCCTTGAACTGA
TTACTGGTCGTAAAGCAATTGACAACACCAAACCTCATGGAGAACAAAACCTAGTGGCGT
GGGCCCGTCCTCTGTTCAAAGACCGCAGAAAATTTCCAAAAATGGCTGATCCGTCACTTC
AGGGCCGCTTTCCTATGAGGGGTCTGTATCAAGCTTTAGCCGTTGCTGCAATGTGTTTGC
AGGAGCAAGCTGCCACTCGGCCTTTCATAGGAGATGTGGTCACTGCCCTTTCATATCTTG
CTTCTCAAGCATACGATCCAAATGCACCCACTCAACATAGTCGGAGCAATGCATCTACCC
CTAGAACCAGAGACCGTGGTAGTGTGAACGGTGACCAGCGGCGTATCCGGTCGCCAAATC
ACCATTCCCCAGATTTGAGGAGAAAAGAAGCCACAACATCATCGAAGTATGAAGCGGAGG
TTAGCAGGAATAGTTCTGGCGGTGGTTCTGGTAGACGGTCAGGCTTGGATGATAGGGATG
TGACAGGTTCACAACAGGGTAGTCCTGCTCAGACGGGAAAGAGGAGGGAAACTTCAAGGA
CCTCCGAGAGGCAGCGTGCTATTGCAGAGGCCAAGACATGGGGTGAGAATTCAAGAGAGA
GGAAGTGGCCGAATGCTCGTGGCAGCTTCGATAGTACAAATGAATAGAACTCTGGAGCAG
AAGGTCTGAGTCATCATTCTAGAAAAAGGATGAGTCGCAAGCCAGTACCAAGCAGGAGAC
AGTTTAGGGACATGGGGTTTGATCTCGGTTCCATGTTTAATGTGAATAGAGCTTTCCTTT
TATTGCCGGCCATCACCACTGCTTCATAGTTTCTTTCTTCCACACAAATATCACCACCAC
AATCACCATCGACACGCCTATTCCTGGCGTCCGTTCCTCGTGAATGTGATCATGCAGATG
TGCCTTCATCATCATCATGGCACAGTCGACATCTGGCTGGAAAGATAGTAAGCAAAGGGG
GGAACTGCTCTGAGGAGGACATGATCCAATCAAAGGAGCCTTTTCTGTTGCTGTTGCATG
CATGACGGGTATCAGCGGGCCGCACAGTTGTTCCGAGCGTAGAGCTTTGTTGTGAAGTCT
GAGTACCGAGGGATGTGATGATTTTTCTTCCCTCGAGGGTTTGTACGGAGGGGTTTTACC
TGTGTTCCATACGTCTGTATTGTGACATTTTTGTTTGTATTGAGTTGTCAGAACACGTCC
TTTGATTTATCTCTTCTGGCAAAGCCGTTGTGCCTCTTCCATCTAAGCTGTGCAATATTT
TTAGGAAGCTTGTTAGCTAATTCTCAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_19524 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g30870.1	492	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi2g27350.1	492
Arabidopsis v10	AT5G18610.1	513	Protein kinase superfamily protein \| chr5:6192736-6195371 FORWARD LENGTH=513