barSeed - Barley Seed Development Database

Probe CUST_12792_PI390587928

Source Contig U35_19525

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12792_PI390587928	Hv_44K_v2	CTTCTGAACTTTACCTGGTTTGAATTTAAGTCCACTTGAGTTGCTATATAATGTGTCGAA	835	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358181	1823	7e-23	1716 - 1775	98	59 / 60	plus	ABC12001 ABC44015
MLOC	MLOC_63980.1	1208	7e-23	788 - 847	98	59 / 60	plus	ABC12001
JLOC1	JLOC1_41966.1	1224	4e-23	861 - 920	98	59 / 60	plus
Harvest35	U35_19525	919	3e-25	836 - 895	100	60 / 60	plus

Contig Sequence (919 bp)

>U35_19525 919 Hv_44K_v2
GGCCTGCAGGGGACCGTGAAGGGTACCAATTCGATACTGTCTTTGACTGGACATTGTTGA
AGTGTAAGCAAACCCAGAAGGTGAAGGCTCAACAGCAAGATCCTGGTGTAAGTAGCAGGC
CGGTTGCAAAGAATATGGACAAACACCAAGCTGAAGCTTCTTGTCAGCTTGAAGCAGAAC
AACGCCCAGCAATCAGAATGCAAATAAGATCTACTGCTGAGAATAGCCGTTCAAATAATC
GACATTCTGATAAATTGAGAGTGATTGCTAGCACTGGCGGATTGCTGCAATCAACATCGT
TTGGCCATGCTGGTGCCCCAAGGCAGAATGTATCAATCTCCAAAACACCATGGCTTGGCG
ATCCCAACCCAGGACCTTCAAACCACCTTTAGCACTCAGATCAGTTAGTCTCGATGTTCA
TGCCGGTCTATTTAGTAACCATTGGTTATCTGGATATGGTTTCAGCTGATAATCCAAATG
CAACATGTAAATTTCAAATTTCTAAGCTGTCTTCTACTGAATAGAAAACGTGGTTGATGT
GATGATGTGAGTTCAACACCACTTATCATGCAAGCGGTCAAGAATTTCGATCTTCCATAT
TATGTGGATAATACGTGGAAACTTAGGATTGTTGATACCCTTGTTTTTGTTCTACATGAG
TGTTTACATCGTCAGCTTCATCTTGGCTCATTGATTCAGGTTTTTTGCCAACTAATATCA
ATGGCGCTGTTTTCTTAAAGAGAGCCTGGGGACTCTTTGGTACAGCTTTAACTTTAATTA
TGGATCAGAGCCTGTGTGATAATGTTTGCTCCTTTTGGCACCCCAGTGGGATCTCCTTCT
GAACTTTACCTGGTTTGAATTTAAGTCCACTTGAGTTGCTATATAATGTGTCGAATTATA
AGTTAAAAAAAAAAAAAAA

Homology of Contig U35_19525 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17910.1	417	6e-53	protein\|CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
Brachypodium v1_2	Bradi3g10320.3	417	3e-57
Arabidopsis v10	None