barSeed - Barley Seed Development Database

Probe CUST_12790_PI390587928

Source Contig U35_19528

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12790_PI390587928	Hv_44K_v2	GGCTTTGTATATTTGTGAGAAGGCTCTATTCGGAACAGATCATGTGCTGCTACTTTGTGG	2083	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354726	2194	2e-23	2099 - 2156	100	58 / 58	plus	ABC11518
MLOC	MLOC_36408.1	1229	9e-22	1126 - 1183	98	57 / 58	plus	ABC11518
JLOC1	JLOC1_23435.2	1612	5e-22	1479 - 1536	98	57 / 58	plus
JLOC1	JLOC1_23435.1	2489	5e-22	2356 - 2413	98	57 / 58	plus
Harvest21	ABC11518	2166	3e-25	2084 - 2143	100	60 / 60	plus	ABC11518
Harvest35	U35_19528	2166	3e-25	2084 - 2143	100	60 / 60	plus

Contig Sequence (2166 bp)

>U35_19528 2166 Hv_44K_v2
ATCCGCCAAGACCCATCTCCCCACCCCCCGCTTTCGGTTTCTTGGAAATGGGGGCGCCGC
CGTGGAGGCTGCTGTGCTGCTGCTGCTGCCGCGAGTCCGATCGCAATGGGGTGGACGACC
TCAAGCTCAAGCCCGACGCAGCCGATGGGGAGGTGGCGGCGGGGGACTGGTACGACCTCC
CGCCATTCCAGGAGTTCACCTTCCAGCAGCTGCGCCTCGCCACCTCGGGCTTCGCCGCCG
AGAACATCATCTCCGAAAGCGGCGACAAGGCGCCTAACGTCGTCTACAAGGGCAAGCTCG
ACGCCCAGCGCCGGATCGCTGTCAAGCGCTTCAGCCGCTCTGCCTGGCCCGACCCACGCC
AGTTCATGGAAGAAGCTAAGTCTGTTGGCCAGCTCCGGAACAAAAGAATCGTAAATTTGC
TTGGTTGTTGCTGTGAAGCCGATGAAAGATTGCTTGTTGCTGAGTACATGCCCAATGACA
CACTGGCGAAGCATCTGTTCCATTGGGAGTCACAGGCAATGGTATGGCCCATGAGATTAC
GGGTTGTTCTGTATCTTGCCGAGGCTTTAGACTACTGCGTAAGCAAGGAGCGGGCTCTCT
ATCATGATCTTAATGCATATAGAGTTCTGTTTGATGATGACTGCAACCCTAGGCTTTCAT
GTTTCGGCCTAATGAAGAACAGTCGAGATGGCAAAAGTTACAGCACAAATTTGGCATTCA
CTCCTCCTGAATATATGAGGACTGGAAGAATAACTCCGGAAAGTGTCATATACAGCTTTG
GTACATTGTTGTTGGATGTTCTTAGTGGGAAGCATATTCCTCCTAGCCATGCTCTTGACC
TGATTCGTGATCGAAACTTCAGTATGCTCATAGACTCCTGTTTAGAGGGCCAATTTTCAA
ATGAAGAAGGAACAGAACTGATGCGTTTAGCTTCAAGGTGCCTGCATTATGAACCACGAG
AGCGGCCTAATGTAAGATCTTTGGTTCTTGCACTGGCTTCTCTTCAGAAGGATGTTGAGT
CCCCATCTTACGATCTGATGGATAAGCCCCGTGGTGGTGCATTTACTCTTCAATCAATTC
ATCTTTCTCCTCTTGCTGAAGCTTGCTCCAGAAAGGATCTTACTGCAATACATGAACACC
TAGAAACAGCTGGCTATAAAGATGATGAGGGAACAGCAAATGAGCTCTCATTTCAGATGT
GGACTAATCAAATGCAAGCTACTATTGACTCAAAGAAGAAGGGTGACACTGCATTTCGAC
AAAAGGATTTTAGCATGGCCATTGATTGCTACTCTCAGTTCATTGATGTTGGTACCATGG
TTTCACCAACAATTTATGCGAGGCGTTGCTTGTCATATCTCATGAATGACATGCCACAAC
AAGCTCTGGATGATGCAGTGCAGGCTCTGGCGATATTTCCTACATGGCCAACTGCATTTT
ATCTTCAGGCTGCGGCCTTATTTTCGTTAGGAAAAGAAAACGAAGCTCGAGAAGCACTCA
AGGATGGTTCGGCTGTGGAGACAAGGAGCAAGGGGCATTGAAGATGGATAGCTGAACATC
AGGTGCTCTCATTTGGACATAATTTGTTGGAGACAACAGCAGTTGTTAATCTGGCTTAGG
CGCATGGGGACTGTCAGTTAGCCTTGTGATATACATATACAATTGGTGGTGTATATACGA
AAAACATGCATAGATAGAATTGACCCGAGAGAGGGAAAGACAGAGGAGATACCAGCGGTT
AATAAATGTACATCCCACATGGAGCTAACAAGGGGAAAGGAGGTGAGCCTGTTCATCCAG
GTCACCCTGCCACATAAAAGAGGAGATATAGAAAGGAAGAAAAGGTGGCCATCTGTTCTG
TCAAACATCATTATCACCCATCAGATCACGTTAGTGTTGGTAATAGATTGTAGGGTTTGT
AGAGCAAGTGGTGTTTGGTCTTTTTGCTCTTGTCTTCGTTCTCAGCTCAGCCAGGCACTG
TGATTTGGGTCATATATTAGTAATGATTTGGTATTGTTAGGAGTGTAGTTGAGAGAAGAT
CGATGAGTTCTCCTGTAATGATTCAATCTTTGGGTACAGTGTGGGCTTTGTATATTTGTG
AGAAGGCTCTATTCGGAACAGATCATGTGCTGCTACTTTGTGGNTCCCATAAGGCATAAG
CCATAA

Homology of Contig U35_19528 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g58750.4	359	protein\|protein kinase family protein, putative, expressed
Brachypodium v1_2	Bradi3g12957.2	508
Arabidopsis v10	AT1G63500.1	487	Protein kinase protein with tetratricopeptide repeat domain \| chr1:23556015-23558403 FORWARD LENGTH=487