barSeed - Barley Seed Development Database

Probe CUST_12773_PI390587928

Source Contig U35_24430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12773_PI390587928	Hv_44K_v2	CGTGGAAACCTGCCTGGAAACCCAGGTCTAGAGTAATGAAATGATTGGTCAGTGAAAAAA	1232	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.450	2.943	1.239	0.645	0.229	0.192
Raw	735.054	1378.895	500.694	413.204	50.949	46.977

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357410	1423	3e-22	1338 - 1393	100	56 / 56	plus	ABC19370
MLOC	MLOC_12573.1	2189	3e-22	1271 - 1326	100	56 / 56	plus	ABC19370
MLOC	MLOC_12573.5	1999	3e-22	869 - 924	100	56 / 56	plus	ABC19370
MLOC	MLOC_12573.4	1527	3e-22	788 - 843	100	56 / 56	plus	ABC19370
MLOC	MLOC_12573.2	2335	3e-22	1186 - 1241	100	56 / 56	plus	ABC19370
MLOC	MLOC_12573.3	1828	3e-22	862 - 917	100	56 / 56	plus	ABC19370
JLOC1	JLOC1_8441.1	1554	1e-22	875 - 930	100	56 / 56	minus
JLOC1	JLOC1_8440.1	966	1e-22	838 - 893	100	56 / 56	plus
Harvest21	ABC19370	1298	3e-25	1233 - 1292	100	60 / 60	plus	ABC19370
Harvest35	U35_24430	1298	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (1298 bp)

>U35_24430 1298 Hv_44K_v2
GGATTGCTCAAGTGGAATCCCCTCCTCCCCCGCCACCAAAACCCTATCTCCGGCGGGCCG
CGTGCTGGGCAGCGGCGATGGCGGAGGACGCCTTCTCGCCGGCCATCCACCCGAACTTGC
ACGGCCCGGAGCACGTCTTCCGGCAGTACTGCGGCCGCCGTGCCGGCATCGTGAAGGCCC
TCACCGAAGATTTGGAGGAGTTCTACGAGCAGTGCGACCCCGACAAGAAGGCCTTGTGCC
TCTTTGGACTGCCTGATGGGACCTGGGAAGTGAATCAACTACCTGAGGAGGTTCCTGTTC
AAATTCCTGAGCCAGTATGTGGTATAAACTTTGCGCGTGATATTACACCCAAGAAAGTTT
GGCTATCCATTGTAGCTGTTCATAGTGATGCATGGTTAATGTCCATAGCATTTTATCACG
CGGGCCGTGTCTCATTTGACAGAGATGGCAGGGAACAACTCTTCAAGTTGATCAATCGTC
TTCCCACTGTCTATGAAGCTGTGAAAGGAAGCTATGAGAGGCAAGCACAGACCCCCAACA
GCAGCAGGAAAAATAAGTCCAGCTCCCAGCCACCAAACCAAATCACTTCTAACTGCAAGC
CGGTGACACCGGCCCTGCCGATGCTCAAGCAAGAGAACTACGCCGATTTTAACAGCTGGG
CGGTAACGGCGAACTGGCCGACGATGCTTAAGGAAGAGGATGATGGTGGCAAGGAGGGTG
GAGGCGGCGAGGATCAAGCCATGAGTAAGTGTGCCGGTTGCGAGGAGATCTACAGTGCTA
ACGACGGGCACCTATGGATTGGCTGCGACCACTGTCAGAGGTGGTTCCACGGCAAGTGTG
TCAGGGTGACTACTGAGATGGCGGACCGAATCGAGAATTACATGTGCCCTAGCTGCAGTT
ACAAAGCAAGGATGAAACCTTCTGACTCAGCGGTGCCGATGAAAGCTTTTGACTCATGAT
GGTGGTGACTGGTGATGCTTGAATCATGGGAAATTTCTTATTTCCTGACGATACTGTTTG
CTCCGTTGTTGCATTAGTTTGGTGATGACTTGTTAGGATTTTGGCTGGTGATGGGAACAT
GAGGTGGATTTCTACAGGCATCTGAATGTGGTGTTCCTTTTTTGAATTTTGACACAGTTT
CAAGACAAAGTCATCCGAGCGGACATAGTCTAGCTACTTAGGTAGCCATCTCATATGTTG
GCAGTATAAGCCGCTGTTGATGGACCGTTGAGCGTGGAAACCTGCCTGGAAACCCAGGTC
TAGAGTAATGAAATGATTGGTCAGTGAAAAAAAAAAAA

Homology of Contig U35_24430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g36730.1	257	5e-72	protein\|PHD finger protein, putative, expressed
Brachypodium v1_2	Bradi5g11130.1	273	2e-96
Arabidopsis v10	AT1G14510.1	252	2e-61	\| Symbols: AL7 \| alfin-like 7 \| chr1:4962171-4964154 REVERSE LENGTH=252