barSeed - Barley Seed Development Database

Probe CUST_12772_PI390587928

Source Contig U35_24431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12772_PI390587928	Hv_44K_v2	TTCAGAGGCGGAGAAGCCAAGTCTTGGCCGCTACAAGTAGGAGTAACTTGCGCGGTGTGT	73	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364919	1571	2e-24	96 - 155	100	60 / 60	plus	ABC20427 ABC40488
MLOC	MLOC_2970.2	616	2e-24	174 - 233	100	60 / 60	plus	None
JLOC1	JLOC1_1780.1	1791	8e-25	317 - 376	100	60 / 60	plus
Harvest21	ABC19686	415	3e-25	74 - 133	100	60 / 60	plus
Harvest35	U35_24431	415	3e-25	74 - 133	100	60 / 60	plus

Contig Sequence (415 bp)

>U35_24431 415 Hv_44K_v2
CAGATGGAACTCATTCCGGAACAGAAGTACTGCCAGCGCTTAGTTCAGGTTTGAAGCAGT
CCGAGAGATCTCTTTCAGAGGCGGAGAAGCCAAGTCTTGGCCGCTACAAGTAGGAGTAAC
TTGCGCGGTGTGTGTGCGCTCCGGGAGGAGCGAGGTCGTCGGGGATGGACGGCGAGATGG
GCGAGGACCTGCTGGCGGAGATCCTCGTCCGGCTGCCGCACAAGTCGCTGGCGCGGTTCC
AGTGCGTGTCCACCACGTGGCGGGGCCTCATCTCCGCCGACTACCTCCGCCGGAGGCTGC
CGCTCATCACGTCCGGCGTGCTGTTCAACGACGGCCCGCGGGACGGCGAGGGCGGGAGGC
GGGCGTACACGTACGCGCGCGCGTTGTCGTCGTCGGGTGAGGATGGCGGTGAGGG

Homology of Contig U35_24431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None