barSeed - Barley Seed Development Database

Probe CUST_12769_PI390587928

Source Contig U35_24435

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12769_PI390587928	Hv_44K_v2	GGGCGTTTAGAGGTTACTTCGAAGGTTACGGGAAATTTTTGCACGGATATCTTTCAGGTT	76	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26929.1	224	6e-24	57 - 115	100	59 / 59	plus	ABC45736
MLOC	AK368916	2351	2e-23	648 - 705	100	58 / 58	plus	ABC15285 ABC45736
MLOC	AK376739	3265	9e-22	2735 - 2792	98	57 / 58	plus	ABC45736
JLOC1	JLOC1_18242.1	218	3e-24	56 - 114	100	59 / 59	plus
Harvest21	ABC45736	662	3e-25	527 - 586	100	60 / 60	minus	ABC45736
Harvest35	U35_24435	674	3e-25	77 - 136	100	60 / 60	plus

Contig Sequence (674 bp)

>U35_24435 674 Hv_44K_v2
AAGATTATCTTAATTATTCGTTCCTCTAATTAGGTCAATGATTTCCTAATTGACATGTTT
GGAGACATTAAGATGTGGGCGTTTAGAGGTTACTTCGAAGGTTACGGGAAATTTTTGCAC
GGATATCTTTCAGGTTGGTTCCAAAGTAGTTTTGAAGACTTCAACATATCCCAACAAGAG
GAATGTTGCGTATGGTACTATTCGTAGTAGTGATCCAAGAACTAAGGCGTGTGGTATTGA
GTTAGGTGCGGAATTTGCCCTTGTGCGCATAGATCAATCTTTGCTTGATAATGAGGAGTT
GGTAAGGGAAGTTTCCGATTGCAAGAAAATTGGTGAAGCATTCTCTTCAGGATACTTAAT
TGCATGGCCTTCAGCTTTTATTCGAGAGAAGGATAATTGAGTTACGGTTGAATTCTTGGA
TGCGGAAGCAAATAAAATCTGAAGATTTTATCTACCAATAATCGTAGTTTACATTGATAG
ATTGAAAAATGTAATATGAATCACAAGATCTTTTTCTTTCGTCCAGTTGATGCAAATTCT
ATGGTGTAATATTCTTCATAGTTGTGTTTTCTATGCTCAAAATGATATGAATGATATCTT
TATTGTAATGTGTATGTATCATACACTTGTATATTCTTAATCAGTATCTTCATATTGAAA
AAAAAAAAAAAAAA

Homology of Contig U35_24435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None