- Probe CUST_12767_PI390587928
- Source Contig U35_24437
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12767_PI390587928 | Hv_44K_v2 | AAAGGGAAAAAGGATGCTAAGTCCCATACTGAAGTCTCGCGTAGCAGTGCAAAGAAGTCT | 612 | GeneList: ivory MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.095 | 1.006 | 1.705 | 1.219 | 0.776 | 0.654 |
| Raw | 234.365 | 314.376 | 491.192 | 516.996 | 124.732 | 113.795 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_72171.1 | 2364 | 2e-24 | 1153 - 1212 | 100 | 60 / 60 | plus | ABC13609 |
| MLOC | MLOC_72171.5 | 2238 | 2e-24 | 961 - 1020 | 100 | 60 / 60 | plus | ABC13609 |
| MLOC | MLOC_72171.3 | 2240 | 2e-24 | 937 - 996 | 100 | 60 / 60 | plus | ABC13609 |
| MLOC | MLOC_72171.2 | 2224 | 2e-24 | 1043 - 1102 | 100 | 60 / 60 | plus | ABC13609 |
| MLOC | MLOC_72171.6 | 1865 | 2e-24 | 712 - 771 | 100 | 60 / 60 | plus | ABC13609 |
| MLOC | MLOC_72171.4 | 2243 | 2e-24 | 937 - 996 | 100 | 60 / 60 | plus | ABC13609 |
| JLOC1 | JLOC1_48006.9 | 2598 | 8e-25 | 875 - 934 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.8 | 2445 | 8e-25 | 875 - 934 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.7 | 2389 | 8e-25 | 878 - 937 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.6 | 2389 | 8e-25 | 878 - 937 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.5 | 2387 | 8e-25 | 879 - 938 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.4 | 2543 | 8e-25 | 879 - 938 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.2 | 2641 | 8e-25 | 1067 - 1126 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.1 | 2644 | 8e-25 | 1067 - 1126 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48006.12 | 2561 | 2e-21 | 841 - 894 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_48006.11 | 2349 | 2e-21 | 841 - 894 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_48006.10 | 2590 | 2e-21 | 867 - 920 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_48006.3 | 2572 | 2e-21 | 998 - 1051 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC20538 | 730 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_24437 | 730 | 3e-25 | 613 - 672 | 100 | 60 / 60 | plus |
Contig Sequence (730 bp)
>U35_24437 730 Hv_44K_v2 GCGACAGTTCAGGATGACAAAAATGAAAACCCTGTGGAGAATGATGAACAGAAGTGGTTG GGATGTGAGACTGTACTGTCCCATTTCGAGGCTCTTATGACAACAAATATTGCTGAGGTT GAATCTCCCGAAGATAAGATGCTCATAGATGAGACCGATGAATTTGGTAATGAGATCCCT CTAGGGAAAATTGTCCAAATTCTTAAATCCCGAGGAGCAAAAAAGACGGGGGGGAAACAG GAGGCAGCATCTGTTCCAGTAAATACTGGAAAAGATGATGATGTCTTGGGTTTGTTAAGA GAAATAAACCTGGATAACCAGGACAATCTGGGGGAGTCGGAAAAGAGCAAACCAAAGAAG CCACAGATGGATATGAAAGAGGGCAACGAGAAGCCAGTAGATTTTTCGACACCAAAGCGC AAAAGATCAGTTTCTAAGAGTAGACCACACTCAGGAAAAGGCAGTAAAGACAGTGATGAG CTTTTAGTGCATTCTGTCAGCAAAGGAAAAACCAACGACTCTTTAGAAAACAAGTTGAAG GAGAAAAGAAGAGCTGACTCAAATGATAAGGACTTGGTAGCCTCACCTACCAGTACCAAA ACCCCTGTATCGAAAGGGAAAAAGGATGCTAAGTCCCATACTGAAGTCTCGCGTAGCAGT GCAAAGAAGTCTGCCGATGAGGACAGTACTATGAGAACTGCTGAACTGGCTAGACACAAT GGGTCCTTCA
Homology of Contig U35_24437 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g17840.1 | 1562 | 3e-98 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g43440.2 | 1552 | 1e-100 | |
| Arabidopsis v10 | None |