barSeed - Barley Seed Development Database

Probe CUST_12765_PI390587928

Source Contig U35_24438

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12765_PI390587928	Hv_44K_v2	TTTGTTTAAGGCTGGGATGCTTGCCCATTGGCTAATTTGATATGATTATCTTCCAAAAAA	757	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10214.1	3356	3e-21	1630 - 1683	100	54 / 54	plus	ABC17852 ABC49945
JLOC1	JLOC1_6665.1	1809	2e-21	1632 - 1685	100	54 / 54	plus
Harvest35	U35_24438	828	3e-25	758 - 817	100	60 / 60	plus

Contig Sequence (828 bp)

>U35_24438 828 Hv_44K_v2
GCCGGAGACGACTCGGCCACCCGCGCCCCCTCGGCGCAGGCCGCTTCCTTCACCGAGCTG
CTCACTGGATTGGCGGCCGCTACCCCAGCCGCTGCTCAGCACAAGCACCACAACTCGTGG
CACCAGATGACCGCGTCTGCCACCGCGGACTACCTCGGCTTCGCCCAGCCCCGGAAATCC
GGGCACGGGATGCTGCACACCTTCGCCTCCCCGGCCCCGCACCTTGGCAACATTGCGCCC
GTCGCCATGGCCCCGGGGCAGCACTTCAGCTTATCAGCTGGCGGCGAGCCGCAGACGGAG
ATGCCGCACTTCTCCTTCTCGCAAGACCACTACATGCCCGTCCATGCGGCGGCAACGTCG
GCTCCGTCAGTAGACTACAATCTCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCAAC
AACACCAGGGGGACCCTTCAGTCCAATTCGCAGCCGCACCTCTCCGGCCACCACCAGCAG
CAGCAGCTCCAGAGGCTGTCTACTCCACTGGATGCTCCGCACATACCCTTCTTGTTCAGC
CCAGCCGTCGCGGTGGCCTCCCCCACCACAGCGGAGAGCCACTTCGGTGCGGCGGCCGCA
TTGCAGCTCTGGGAGGGGTTCAGGCACTCCGACATGAAGGAGAAGGGCAAGAACTGATCA
ATGGCTGTGCAATGCAGCGCTTCTTTTGGATGGTAGGTGATGAACTCTCCAAATGCATAC
GTTTCCTTTGCTTTTTGGCTGCTTGTGTTTTTAGGCCTTTGTTTAAGGCTGGGATGCTTG
CCCATTGGCTAATTTGATATGATTATCTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g05720.1	446	6e-60	protein\|TCP family transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g58450.1	443	1e-73
Arabidopsis v10	None