barSeed - Barley Seed Development Database

Probe CUST_12739_PI390587928

Source Contig U35_24447

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12739_PI390587928	Hv_44K_v2	GTTCCAACATTTCATGTCATGCGACATCGCCATTGCCATCCAGTTGTACAAAATTCTGTG	754	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357070	3588	2e-24	3493 - 3552	100	60 / 60	plus	ABC20675
MLOC	MLOC_54024.3	3468	2e-24	240 - 299	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.4	3335	2e-24	235 - 294	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.5	3340	2e-24	235 - 294	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.1	3340	2e-24	287 - 346	100	60 / 60	minus	ABC20675
MLOC	MLOC_54024.2	3335	2e-24	287 - 346	100	60 / 60	minus	ABC20675
JLOC1	JLOC1_34755.4	3213	8e-25	2869 - 2928	100	60 / 60	plus
JLOC1	JLOC1_34755.3	3218	8e-25	2874 - 2933	100	60 / 60	plus
JLOC1	JLOC1_34755.2	3099	8e-25	2755 - 2814	100	60 / 60	plus
JLOC1	JLOC1_34755.1	3138	8e-25	2794 - 2853	100	60 / 60	plus
Harvest21	ABC20675	868	3e-25	55 - 114	100	60 / 60	minus	ABC20675
Harvest35	U35_24447	868	3e-25	755 - 814	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_24447 868 Hv_44K_v2
GAGTCAGAGATCCTGTCCTTTTCTCAGAAGCAACTCGGTTAGAATTTCCAGTTTACGAGA
ACATCCAGAAACCCTTGCGTAGACCCGATGTAAATTTTTCAATGTTTTCATCTGTCATTG
GCAAGGAATTGATATGTCACCAGGATTCCCGATTTGAAGTTTGGGGAACGAAAGGTTATG
GTATCCAACCAACAGGCACAACAAGAAAGCTGCCAGAATACCAAAAGAAAGAAGTTTCTA
GTAGTCCCAATCGATTAATAAAATCTTCTTACAGTAGACAAGATGAAGCTGGCTTGCAAA
AATCTCTTTTAGCACCAAGTGCTAATAAATTTGATGATAAAAGAGATTATTTTGGCTTTA
TCAGTCATGAAGAGGTCGCAAGCCAATGGATGGTACCTGCTTGCTTTGCTGTCACTACTT
GCGTTATGGTGTACGTCAGTTGCAGAGCGCAACAAAGGCGCCGTCGACGAAGGAAAGGGC
CCTCAACTGGTCGTTTGACAAGTTTGGTATAACATGGAAAGTTGTCTGGAGCCAAATAAG
GTCTTGCTCCTGCGTATCTGGCCATCTGCCATGGTATATGATAACCGGAGCTACATTCAC
TGACTGGACATAAAGAAGCTCAGCTCTGCTGGAGACCCCTGATCATCATGTTTCCAGCTT
GCAATGGATGTGAATCGAGGTCCAAGTCATGGTGGCTCATGTTTAGTCTGTGCGAAGAGA
GCCGACTCAAACACCTATGCAACCTCATGGCTATGTTCCAACATTTCATGTCATGCGACA
TCGCCATTGCCATCCAGTTGTACAAAATTCTGTGTCTATAATAATAATAATAATAGACTG
CTTTGGGACATAAAAAAAAAAAAAAAAA

Homology of Contig U35_24447 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06810.1	681	2e-58	protein\|OsSub49 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g48447.1	1047	2e-71
Arabidopsis v10	None