- Probe CUST_12725_PI390587928
- Source Contig U35_36429
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12725_PI390587928 | Hv_44K_v2 | CAATTGGGCCATCATATATAGAGTTACTTGATGTTCAACACTTTCACAATAAAGAAGCTC | 343 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.410 | 1.546 | 1.006 | 1.097 | 0.365 | 0.225 |
| Raw | 240.239 | 161.005 | 94.895 | 146.889 | 20.030 | 13.312 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15027.1 | 2253 | 2e-24 | 15 - 74 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15027.2 | 1829 | 2e-24 | 12 - 71 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_10287.1 | 2330 | 8e-25 | 2255 - 2314 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36429 | 410 | 3e-25 | 344 - 403 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_5564 | 738 | 3e-25 | 641 - 700 | 100 | 60 / 60 | plus |
Contig Sequence (410 bp)
>U35_36429 410 Hv_44K_v2 GGCGAATTGGGCCCTTTCGAAAATGCTCGAGCGGCCGCTCTGATTGCTCAAGATGGGAAC CCTCTTGCGCGCACCATGCTGCTGAACGGAGTTCCTCTGGAGCTCACTGAAGATGGTGAC ATCCCTCCGATGTACCCGGTGCAGGTTTCAGCCAGTTCACCGCTCTATGTCGCCCCGCTG TCCATTGCCTTCGTCGTCTTCCCTGATTTTGAGGCTGACGCTTGCTAGCAATGATCAACT GTAGTTTTTAGATAGGATACCATGCGAGGTTTTCAGCTACAACAATATAGCCCTTCTCAA CTATATACGGATACTGAAAATGATGTGTTGATGTGTTCTGCCCCAATTGGGCCATCATAT ATAGAGTTACTTGATGTTCAACACTTTCACAATAAAGAAGCTCAAAAACT
Homology of Contig U35_36429 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |