barSeed - Barley Seed Development Database

Probe CUST_12718_PI390587928

Source Contig U35_48404

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12718_PI390587928	Hv_44K_v2	TATCTTTTCAAAATCTCATCTACCCCCTTGATGGGAGGTCGACTCTGTCTGGACTTGGAT	485	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62261.1	1971	2e-24	1337 - 1396	100	60 / 60	plus	None
JLOC1	JLOC1_40728.1	1952	8e-25	1015 - 1074	100	60 / 60	plus
Harvest21	ABC50141	694	3e-25	486 - 545	100	60 / 60	minus
Harvest35	U35_48404	694	3e-25	486 - 545	100	60 / 60	minus

Contig Sequence (694 bp)

>U35_48404 694 Hv_44K_v2
GACCTTACAAACANTCTGGACAGCGAGGCGACTCGTTCACATATCCTTTACCTGTTACAT
AAAAAAATTGCGAGATCCCGAAACCATCAATCAATCGTGTTCAATGCAATGGACAGATGA
TGCTGTGTCTGCTCGATCCGGTAAGCCCATGGCAGCACCTCTTCTTCTGTTCAACAGCTG
CATGTGGTTTGTCGTGCTAGTTAGTGCACAGTGCAGCTCCTGGGAGCTACAGGCAGCATC
CACTCGACGGAAATGGATTCTAGAAAGGAGGCCAGTGGACGTCGCAAACTGTTGTTGATG
GTTCTGATTTCAAGTGTGCTACGGATTTACATTGCACTCGTCCATGAATCGATCTTCTCG
GGTGAGAAACCTCCTCCAGTACTTCTTGTAGTCCGGTATGCCTAACTCGAGCCAAGGCTT
CATATTGCCATTGTAGTGCAATGCTGCAGAGCTCTGTGCAACCTCCGGATCGATTCCATA
GTCATATCCAAGTCCAGACAGAGTCGACCTCCCATCAAGGGGGTAGATGAGATTTTGAAA
AGATAACAGGCTTAAAGAAAAGGCAGCTTCTCTCAGAGACACCTCGTCTTTTTTCTTGAC
CTGTTTAAGGAGCAACAGGTAATTCTCTGTTACTTTATGCTTCCTCCATTTATCCAAATT
GATCACATTCACCCCAGACATCCATGCACATGAT

Homology of Contig U35_48404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48370.1	626	3e-63	protein\|glycosyl transferase, family 8, putative, expressed
Brachypodium v1_2	Bradi1g17570.1	622	4e-64
Arabidopsis v10	None