barSeed - Barley Seed Development Database

Probe CUST_12713_PI390587928

Source Contig U35_48407

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12713_PI390587928	Hv_44K_v2	CACCCTCAGATCCAATGTAAATGTCATGGTTTTCGTTCAATGCCACAATTAGCCAGAAAT	-1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_1493.1	1889	7e-23	18 - 78	98	60 / 61	minus	None
JLOC1	JLOC1_913.1	1970	4e-23	1881 - 1941	98	60 / 61	plus
Harvest21	ABC50148	685	1e-23	4 - 64	98	60 / 61	minus
Harvest35	U35_48407	685	1e-23	4 - 64	98	60 / 61	minus

Contig Sequence (685 bp)

>U35_48407 685 Hv_44K_v2
TTTATTTCTGGNCTAATTGTGGCATTGAACGAAAACCATGACATTTACATTGGATCTGAG
GGTGCACATTGTAGCAGCCTACTTGCCACAAAAGTCACCCCTGTGCTTGAAGTTACTACA
CAAATTTGTGGATATTTATTCCTCGGAAGAAAGTTACGAAAATGTTGTTCAAGTCCAAGT
AGATTATAAATAATATGTATACCGAAGGAAGATACAAACAGATAATGGACACCGCACCGC
TGTTTTGATGGACTAGCAAACAATGGGAGATTTAACGAATACCAAAATATATGCAGCATA
GAGAATCAGTCCGTAGGGTTATAAAAATCAGCTCTTCTGATGGACAGCAATTGCATGAAT
GTCCATCTCCTTCAGCATGACCGACCGTCCACAAGAGTCGCATGGTGCAGTCCTGGATCC
ACAGATACTCTCATGTTCGCACATGTTTCGAAGCCGATCTCGAACATCGAGCGGCTGTCC
ACCAGCTTGAACCGTGTCGCCACAGAAACGACACACAATCAAGCGAAATGGGCAGGTTGA
GGATTGGTGTTGGACCATTTCTTCCTTTTCTAGAACTACCCCGCAGGGGCAGTTCAGCGG
CTCATGGAAGACTTTCATGTGCTTCTCCGTTTCTCTCTGCTGGAAAGCTTGTCCACACTT
ACTGCAGTGCACATGATCTGCTGCT

Homology of Contig U35_48407 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g35040.1	570	2e-74	protein\|ZOS1-09 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g40480.1	570	6e-79
Arabidopsis v10	AT4G15420.1	561	9e-57	Ubiquitin fusion degradation UFD1 family protein \| chr4:8823822-8825949 FORWARD LENGTH=561