barSeed - Barley Seed Development Database

Probe CUST_12711_PI390587928

Source Contig U35_24450

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12711_PI390587928	Hv_44K_v2	AGTCCTGGTCCATGTCATGCAAATATCTCCTGAATTTGATCGATCAAAAGGAAGCAAGTT	516	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.085	0.241	0.664	1.765	1.426	2.100
Raw	3.361	22.894	57.370	244.522	67.606	106.325

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57296.2	2402	2e-24	2335 - 2394	100	60 / 60	plus	None
JLOC1	JLOC1_37113.2	2599	8e-25	2244 - 2303	100	60 / 60	plus
JLOC1	JLOC1_37113.1	2705	8e-25	2350 - 2409	100	60 / 60	plus
Harvest21	ABC23167	576	3e-25	517 - 576	100	60 / 60	plus
Harvest35	U35_24450	576	3e-25	517 - 576	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_24450 576 Hv_44K_v2
GACGTCGGGCAGCTGGAGTTCTTCAACGGGCAGGCGCCCGACGGCGTCAAGAGCTTCGGC
AGCTCGTTGTGCATGGCGTCCATCTCGCTCGGGAACTACGTGAGCATCATGCTGGTCAGC
GTGGTGACCACCCTGACCGCCGGGGACAAGAGGCCTGGGTGGATCCCGGGTAACCTCAAC
TCCGGCCACCTCGACAGGTTCTACTTCCTCCTCGCGGCGCTCTCGCTCGTCGACCTCGCC
GTGTACGTGGCCTGCGCGATGTGGTACAAGGGCATCAAGCTCGACAGCAACGAGGAGAAG
GGAAAGGTGCCGGTGCATGTTTAGGGCCTTTTTCGTCCTTTGAGGTATCTATATAAGTGG
GCTTGCTATAGGCTCGGCCAACGTGCTGGGCTGCCGATGGGCTTTCCCGTAGTAAAAAGA
ATAAGTGTGTCATCCTGTGTTTGCTGCAAAGGGTCATGTTGCTTTCTGTCCTAGTTTCAA
TTCGAAGACAAAGAGTACTTACAAAGAATATCCGTGAGTCCTGGTCCATGTCATGCAAAT
ATCTCCTGAATTTGATCGATCAAAAGGAAGCAAGTT

Homology of Contig U35_24450 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g53380.1	586	3e-51
Arabidopsis v10	None