barSeed - Barley Seed Development Database

Probe CUST_126_PI415269222

Source Contig TA38192_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_126_PI415269222	Hv_44K_v2	TGTACCCATGGTGCTTAATAAAAAGCTACTACAGACAGATCGTGTGTTAGTCTCTACCTT	1476	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.177	0.431	2.252	2.423	1.182	0.956
Raw	39.045	154.184	680.401	1077.488	202.282	174.526

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32566.1	877	3e-24	780 - 838	100	59 / 59	plus
Harvest35	U35_17896	1549	1e-24	1474 - 1532	100	59 / 59	plus

Contig Sequence (1536 bp)

>TA38192_4513 1536 Hv_44K_v2
AACCGATTTCTCCTCCCTCCTCTCCATCCTTAACCAGGAAGATATCATCGGCGTCGGCAT
CGCGTAGATAGATAGATAGCGCCACCGGAAAGTTGCTTTTGCTGCTGCTGCTATATATCT
CTTGCGGCCTGTGGCATCGTGGAGGAGGATCAATTGCCGCTGGCTTAAGGAAGGAAGAGC
TGAATTGGTTATCCGGCGAGTCATCCAGGGAGCTAGGCCAAGGATATATACGTACATGGA
GGCGCCGGCGGCCAGAGGAGGAGGAGCGGTGGCGTCCGTGGTGGTGGTGGTGGTGGTGAT
GGCGATGGCGGCGGCGACGGCGCGGGCGCAGCTGCAGGTCGGGTACTACGACACGCTGTG
CCCGGCGGCGGAGATCATCGTGCAGCAGGAGGTCAGCAAGGGGGTGTCCGGCAGCCCCGG
CACCGCCGCCGGCCTCCTCCGGCTCCACTTCCACGACTGCTTCGTCAGGGGTTGCGACGG
GTCGGTGCTGGTGGACTCGACGGCGGGGAACCAGGCGGAGAAGGACGCGCCGCCCAACTC
GAGCCTGCGGGGGTTCGAGGTGATCGACGCGGCCAAGACGCCGGCTGGAGCAGGCCTGCT
ACGGCGTCGTCTCCTGCGCCGACGTGCTCGCCTTCGCCCGCCAGAGACGCCCCTCGCCCT
GGTTGGCGGCAACTCGTACCAGGTGCCGGCGGGCCGACGAGACGGCAACGTCTCGGTGGC
CGGGGAGACCAACGGGAACCTGCCGCCGCCGACCGCCAACGTGAACCAGCTCAACCAGAT
CTTCGGCTCCAAAGGCCTCACCCAGGCCCAGATGGTCGCGCTCTCAGGGGCGCACACGGT
GGGGATGGCGCAGTGCAGCTCCTTCAGCAGCCGGCTCTACTCGTACGGGACCAGCGGCGG
GAAGGACCCCAGCATGGACCCGACCTACCTGGCCACGCTCAGCACGCAGTGCCCGCAGTC
CGGAGCCAGCCAGCCCGTCGCCATGGACCCCGTCACCCCCAACACCTTCGACACCAACTA
CTACGCCAACGTCGCCGCCAACCGCGGCCTGCTCGCCTCCGACCAGGCGCTGCTCGCCGA
CAACAGCACCGCCGCCCAGGTCCTCGGCTACACCACCAACCCCGGCACCTTCCAGACCGA
CTTCGCCAACGCCATGGTCGCCATGGGCGCCATCGGCGTGCTCACCGGCAACACCGGCAC
CATCAGGACAAACTGCAGGGTCGTCGGCTGATCGATCGAGCGTGTGATTGAACTGAATTG
TACTATGGAGTAGATAGGTATAGTGTACTGTAAACTGATTGGTCGATCTGTACTCGCTAG
CTCTTAGCTTAGCTTAGCCCCACCGTCCTCTCTCTTTTCTCCTTGATCTTGCATACTGTA
CTTTCTTTCACTGCTTGTGTTCCCTTAGCCTCTGTATGTATTATCTAGTTGGAACTGTAT
GTAATGACATGATCACATGATTGGGTTGGGTACCAATGTACCCATGGTGCTTAATAAAAA
GCTACTACAGACAGATCGTGTGTTAGTCTCTACCTT

Homology of Contig TA38192_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02920.1	332	3e-145	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g77140.1	334	5e-153
Arabidopsis v10	AT1G05260.1	326	8e-76	\| Symbols: RCI3, RCI3A \| Peroxidase superfamily protein \| chr1:1529827-1531271 FORWARD LENGTH=326