barSeed - Barley Seed Development Database

Probe CUST_126_PI390587928

Source Contig U35_4801

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_126_PI390587928	Hv_44K_v2	TCTGTGACGCTCAATTTTTAATGTGCAATATTGCCAATGGTTTATCCTGTTTGGAACCAA	870	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18790.1	1605	3e-21	1540 - 1600	97	59 / 61	plus	ABC04384 ABC10389
JLOC1	JLOC1_13012.1	1643	2e-21	1540 - 1600	97	59 / 61	plus
Harvest21	ABC10389	945	3e-25	871 - 930	100	60 / 60	plus	ABC10389
Harvest35	U35_4801	945	3e-25	871 - 930	100	60 / 60	plus

Contig Sequence (945 bp)

>U35_4801 945 Hv_44K_v2
TTCCTTACGATCCTAAATATCATGAGGAATGGGTGCGGAACAATGCCCGTGCCAATGATA
GATCTCGGCGCAATGATAGGCCCCGCAACTTTGATAGGTCAAGGAACTTTGAGAGGAGAA
GGGAGAACATGCAGAACTTCCAAAACAGAGATGCACCTCCTGGGCAGCAGGGTTTCAATG
GCCCTCCACCTGGCCAGAACCCTGGCGGCATGCCTCCACCTCCACCACCTAGTCAGAACC
GTGGCAACGTGCCTCCACCATATACTCCAGGTGGTCCGTCAAATTACCAGCCCCAAATGC
AGAACCCACAGGCAGCATACACACCGGGTGGTGCACCCCAAATGCCGAACCCACAGACAG
GGTATGCACCGGGCGGTGCACCCCAAATGCCCAACCCACAGACAGGGTACACACCGGGCG
GTGCACCTCACATGCCAAACCCACAGGCGGGCTACATGCCCAGTGGTGCTTCTAACCATC
AGCAAGGTGGTCAAGCTGGCTACCAAAGCGGACCTGCTGGGCATCAGGGAGGAAACCAAG
TTTACCCAGGAGGCAACTTGCCTGGCGGCCCTGGACCAGCACACTCAGGCAGCAGTCCTG
GATATCAAGGTGGCAACGCACCACCTCGTGAAGGTCATGGCTATCCCGGCGGCTACAACA
GCACTGCACCAGGTGGCTATAATCAACAGTAAGACTAAGGATGAAGCAACGCAAACCACC
AATGAGGCGCCACTGAATCACAAATGAACTGATTTTCCTGGGAAGCGTTGCCAGTATAAT
TCCGTAGAAGATACGATGTGCAGTAGCATACGTCCAATTATTGTTATGGAATGTTTTTAT
TGATTCTCCTTCAAAAAATAATCTAGATATTCTGTGACGCTCAATTTTTAATGTGCAATA
TTGCCAATGGTTTATCCTGTTTGGAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4801 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None