- Probe CUST_12699_PI390587928
- Source Contig U35_50722
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12699_PI390587928 | Hv_44K_v2 | TTCCCGATCAGGATTTTTCCCCGGTCATTGAGGCGTTCAAGGCCAAAGTGATGAGCTTGC | 0 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.210 | 0.386 | 0.876 | 1.118 | 1.332 | 2.504 |
| Raw | 8.279 | 24.527 | 49.548 | 95.821 | 39.516 | 84.815 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_50722 | 235 | 3e-25 | 1 - 60 | 100 | 60 / 60 | minus |
Contig Sequence (235 bp)
>U35_50722 235 Hv_44K_v2 GCAAGCTCATCACTTTGGCCTTGAACGCCTCAATGACCGGGGAAAAATCCTGATCGGGAA GGCCCAACGATTTGGCAACCTTGGACAACTCGTTTGCAGCTGCAGCTGAAGGAATGGGCT GGGACACCGATTCTGCCAGGGCCAACGCCATCCTTAAATCCTTCTGCTGATGTTTCAGGG GAAAGGCATGAGGGAATGCACCCTTAACCATGGAAGGGCCCTTGAGGGAAAACAT
Homology of Contig U35_50722 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |