- Probe CUST_12695_PI390587928
- Source Contig U35_36434
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_12695_PI390587928 | Hv_44K_v2 | GAGTCCTCTACACTTCTTAAAATGATTTTGTTGGTAGCAAACAAAGGATCATGAGTACCA | 38 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 9.901 | 4.822 | 0.689 | 0.719 | 0.646 | 0.945 |
| Raw | 119.639 | 95.867 | 11.620 | 19.578 | 4.819 | 8.623 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367199 | 3523 | 3e-22 | 3439 - 3497 | 98 | 58 / 59 | plus | ABC51588 |
| MLOC | MLOC_57353.2 | 1831 | 3e-22 | 1720 - 1778 | 98 | 58 / 59 | plus | ABC51588 |
| MLOC | MLOC_57353.3 | 1828 | 3e-22 | 1717 - 1775 | 98 | 58 / 59 | plus | ABC51588 |
| MLOC | MLOC_57353.1 | 1880 | 3e-22 | 1716 - 1774 | 98 | 58 / 59 | plus | ABC51588 |
| JLOC1 | JLOC1_37156.1 | 1975 | 1e-22 | 1724 - 1782 | 98 | 58 / 59 | plus | |
| Harvest35 | U35_36434 | 353 | 3e-25 | 39 - 98 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_49311 | 309 | 5e-23 | 44 - 102 | 98 | 58 / 59 | minus |
Contig Sequence (353 bp)
>U35_36434 353 Hv_44K_v2 GGCGAATTGGGCCCTTCAGAAGATGCTCGAGCGGCCGCTGGTACTCATGATCCTTTGTTT GCTACCAACAAAATCATTTTAAGAAGTGTAGAGGACTCTTATCTACAGCTGACCGCACGA CAAGTGCAGTTGGCCATCTCAAACAAACATAAAAAAGAGGACTTTATACAATTGGATATA GCTGCCGTTGCTACGTTGAGCTCTTCTCGTTCTTCGTGGTTCGGAGCAGTTCTTTCGCCA TTGATGAGAAGGATTGAGCGCCATGAGCCATATCTGCGGACCGAAGATTAATGCCCTCCA ATTTTTTAATGTTCTCTTGCAGCTTGTTTCCAATCATTTTTGGTACACTGGTT
Homology of Contig U35_36434 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |