barSeed - Barley Seed Development Database

Probe CUST_12685_PI390587928

Source Contig U35_12483

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_12685_PI390587928	Hv_44K_v2	TTCAATGGAGGAAGCTGACATCTTAAGTGACCGAATCGCTATCATGGCAAAGGGGAAATT	559	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.387	1.954	1.207	0.637	0.272	0.259
Raw	81.365	102.160	54.769	48.354	6.668	6.310

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74648.2	2860	2e-24	473 - 532	100	60 / 60	minus	ABC12769
MLOC	MLOC_74648.1	3350	2e-24	1021 - 1080	100	60 / 60	minus	ABC12769 ABC40411
JLOC1	JLOC1_49765.1	3319	8e-25	2205 - 2264	100	60 / 60	plus
Harvest21	ABC25514	651	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_12483	651	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (651 bp)

>U35_12483 651 Hv_44K_v2
GCTGCAAGTGCAAAACAACTAAGCCATTCCATTCTGTCAAAGGCTTATGGGTGAACCTTG
AGAAGGATCAGCTGTTTTGTCTTCTTGGGCCAAATGGAGCTGGTAAAACAACTACAATCA
GCTGCCTGACTGGAATCACACCAATTACCGGCGGCGATGCATTGATTTATGGTCATTCTG
TTCGAAGCAGTGCGGGTATGGCTAATATTCGCAGAATGATTGGAGTCTGTCCGCAGTTTG
ACATCCTATGGGACGCATTGACGGCTAAGGAGCACATGGAATTGTTTGCCAGCATCAAGG
GTTTGCCACCATCAACAATCAAGTCGGTAGCAGAGCAGTCACTAGCCCAAGTGAAGCTCA
GCCAGGCAGCTAATGTTAGAGCAGGTAGCTATAGTGGTGGAATGAAACGGCGGTTGAGTG
TTGCGATTGCTCTAATTGGTGACCCAAAATTGGTCTTTCTTGATGAGCCGACAACTGGCA
TGGATCCAATAACAAGGAGGCATGTCTGGGACATCATCGAAGAGGCAAAGAAGGGAAGAG
CTATTGTCTTGACCACCCATTCAATGGAGGAAGCTGACATCTTAAGTGACCGAATCGCTA
TCATGGCAAAGGGGAAATTGCGGTGTATCGGCACTTCAATAAGGCTGAAGT

Homology of Contig U35_12483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30740.1	969	1e-141	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g35400.2	914	3e-143
Arabidopsis v10	AT5G61730.1	940	8e-125	\| Symbols: ATATH11, ATH11 \| ABC2 homolog 11 \| chr5:24803583-24807898 REVERSE LENGTH=940